MiDAS: the field guide to the microbes of activated sludge. - Simon Jon McIlroy; Aaron Marc Saunders; Mads Albertsen; Marta Nierychlo; Bianca McIlroy; Aviaja Anna Hansen; Søren Michael Karst; Jeppe Lund Nielsen; Per Halkjær Nielsen (Database J. Biol. Databases Curation, 2015)

MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups. - Simon Jon McIlroy; Rasmus Hansen Kirkegaard; Bianca McIlroy; Marta Nierychlo; Jannie Munk Kristensen; Søren Michael Karst; Mads Albertsen; Per Halkjær Nielsen (Database J. Biol. Databases Curation, 2017)

Metagenomic binning with assembly graph embeddings. - Andre Lamurias; Mantas Sereika; Mads Albertsen; Katja Hose; Thomas Dyhre Nielsen (Bioinform., 2022)

Graph Neural Networks for Microbial Genome Recovery. - Andre Lamurias; Alessandro Tibo; Katja Hose; Mads Albertsen; Thomas Dyhre Nielsen (CoRR, 2022)

Metagenomic Binning using Connectivity-constrained Variational Autoencoders. - Andre Lamurias; Alessandro Tibo; Katja Hose; Mads Albertsen; Thomas Dyhre Nielsen (ICML, 2023)

Integrating Multi-Modal Spatial Data using Knowledge Graphs - a Case Study of Microflora Danica. - Mads Corfixen; Thomas Heede; Tomer Sagi; Mads Albertsen; Thomas D. Nielsen; Katja Hose (SeWeBMeDA@ESWC, 2024)