Issues in Computational Methods for Functional Genomics and Systems Biology. - Magali Roux-Rouquié; Leroy E. Hood; Sandrine Imbeaud; Charles Auffray (CMSB, 2003)

Virtualization in Systems Biology: Metamodels and Modeling Languages for Semantic Data Integration. - Magali Roux-Rouquié; Michel Soto (Trans. Comp. Sys. Biology, 2005)

Metamodeling Integration Architecture for Open Biomedical Ontologies: The GO Extensions' Case Study. - Marie-Noëlle Terrasse; Marinette Savonnet; Éric Leclercq; George Becker; Eric Fourmentin; Damien Lariviere; Pierre Grenon; Magali Roux-Rouquie (ER (Tutorials, Posters, Panels & Industrial Contributions), 2007)

Domain Knowledge Integration and Semantical Quality Management -A Biology Case Study-. - Marie-Noëlle Terrasse; Éric Leclercq; Marinette Savonnet; Arnaud da Costa; Pierre Naubourg; Magali Roux-Rouquie (ER Workshops, 2008)

Seekbio. - Christophe Jouis; Magali Roux-Rouquié; Jean-Gabriel Ganascia (Information Retrieval in Biomedicine, 2009)