Next-Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges. - Sara El-Metwally; Taher Hamza; Magdi Zakaria; Mohamed Helmy (PLoS Comput. Biol., 2013)

LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads. - Sara El-Metwally; Magdi Zakaria; Taher Hamza (Bioinform., 2016)

A fast algorithm for constructing suffix arrays for DNA alphabets. - Zeinab Rabea; Sara El-Metwally; Samir Elmougy; Magdi Zakaria (J. King Saud Univ. Comput. Inf. Sci., 2022)