Approximate geodesic distances reveal biologically relevant structures in microarray data. - Jens Nilsson 002; Thoas Fioretos; Mattias Höglund; Magnus Fontes (Bioinform., 2004)

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis. - Charlotte Soneson; Henrik Lilljebjörn; Thoas Fioretos; Magnus Fontes (BMC Bioinform., 2010)

The projection score - an evaluation criterion for variable subset selection in PCA visualization. - Magnus Fontes; Charlotte Soneson (BMC Bioinform., 2011)

Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings. - Charlotte Soneson; Magnus Fontes (Comput. Stat. Data Anal., 2014)

Low Bias Local Intrinsic Dimension Estimation from Expected Simplex Skewness. - Kerstin Johnsson; Charlotte Soneson; Magnus Fontes (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

BayesFlow: latent modeling of flow cytometry cell populations. - Kerstin Johnsson; Jonas Wallin; Magnus Fontes (BMC Bioinform., 2016)

Erratum to: BayesFlow: latent modeling of flow cytometry cell populations. - Kerstin Johnsson; Jonas Wallin; Magnus Fontes (BMC Bioinform., 2016)

SMSSVD: SubMatrix Selection Singular Value Decomposition. - Rasmus Henningsson; Magnus Fontes (Bioinform., 2019)