Exploring Genome Rearrangements using Virtual Hybridization. - Mahdi Belcaid; Anne Bergeron; Annie Chateau; Cédric Chauve; Yannick Gingras; Guylaine Poisson; M. Vendette (APBC, 2007)

Comparative Genomics and Extensive Recombinations in Phage Communities. - Guylaine Poisson; Mahdi Belcaid; Anne Bergeron (RECOMB-CG, 2009)

Virus DNA-fragment classification using taxonomic hidden Markov model profiles. - Mark Menor; Kyungim Baek; Mahdi Belcaid; Yannick Gingras; Guylaine Poisson (SAC, 2010)

Mosaic Graphs and Comparative Genomics in Phage Communities. - Mahdi Belcaid; Anne Bergeron; Guylaine Poisson (J. Comput. Biol., 2010)

Efficient clustering of populations using a minimal SNP panel. - Mahdi Belcaid; Kyungim Baek; David Haymer; Guylaine Poisson (SAC, 2011)

The evolution of the tape measure protein: units, duplications and losses. - Mahdi Belcaid; Anne Bergeron; Guylaine Poisson (BMC Bioinform., 2011)

Reconstructing the history of a WD40 beta-propeller tandem repeat using a phylogenetically informed algorithm. - Philippe Lavoie-Mongrain; Mahdi Belcaid; Aïda Ouangraoua; Anne Bergeron; Guylaine Poisson (PeerJ Comput. Sci., 2015)

A profile-based probabilistic approach for the detection of anomalies in the cytochrome C oxidase I amplicon sequences. - Mahdi Belcaid; Guylaine Poisson (SAC, 2017)

Usage Patterns of Wideband Display Environments In e-Science Research, Development and Training. - Jason Leigh; Krishna Bharadwaj; Arthur Nishimoto; Lance Long; Jason Haga; John Burns; Francis Cristobal; Jared H. McLean; Roberto Pelayo; Mahdi Belcaid; Dylan Kobayashi; Nurit Kirshenbaum; et al. (eScience, 2019)

MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data. - Cédric Arisdakessian; Sean B. Cleveland; Mahdi Belcaid (PEARC, 2020)

Securing Collaborative Work in Wide-band Display Environments. - Krishna Bharadwaj; Andrew Burks; Andrew E. Johnson 001; Lance Long; Luc Renambot; Maxine D. Brown; Dylan Kobayashi; Mahdi Belcaid; Nurit Kirshenbaum; Roderick S. Tabalba; Ryan Theriot; Jason Leigh (CIC, 2021)

Efficient DNA sequence partitioning using probabilistic subsets and hypergraphs. - Mahdi Belcaid; Cédric Arisdakessian; Yuliia Kravchenko (SAC, 2021)

CoCoNet: an efficient deep learning tool for viral metagenome binning. - Cédric Arisdakessian; Olivia D. Nigro; Grieg F. Steward; Guylaine Poisson; Mahdi Belcaid (Bioinform., 2021)

Traces of Time through Space: Advantages of Creating Complex Canvases in Collaborative Meetings. - Nurit Kirshenbaum; Kylie Davidson; Jesse Harden; Chris North 001; Dylan Kobayashi; Ryan Theriot; Roderick S. Tabalba; Michael L. Rogers; Mahdi Belcaid; Andrew Thomas Burks; Krishna Bharadwaj; Luc Renambot; et al. (Proc. ACM Hum. Comput. Interact., 2021)

The C-MĀIKI Gateway: A Modern Science Platform for Analyzing Microbiome Data. - Sean B. Cleveland; Cédric Arisdakessian; Craig Nelson; Mahdi Belcaid; Kiana Frank; Gwen A. Jacobs (PEARC, 2022)

Leveraging deep contrastive learning for semantic interaction. - Mahdi Belcaid; Alberto Gonzalez Martinez; Jason Leigh (PeerJ Comput. Sci., 2022)

Reflecting on the Scalable Adaptive Graphics Environment Team's 20-Year Translational Research Endeavor in Digital Collaboration Tools. - Mahdi Belcaid; Jason Leigh; Ryan Theriot; Nurit Kirshenbaum; Roderick S. Tabalba; Michael L. Rogers; Andrew E. Johnson 001; Maxine D. Brown; Luc Renambot; Lance Long; Arthur Nishimoto; Chris North 001; et al. (Comput. Sci. Eng., 2023)

Space to Teach: Content-Rich Canvases for Visually-Intensive Education. - Jesse Harden; Nurit Kirshenbaum; Roderick S. Tabalba; Ryan Theriot; Michael L. Rogers; Mahdi Belcaid; Chris North 001; Luc Renambot; Lance Long; Andrew E. Johnson 001; Jason Leigh (EduVIS@VIS, 2024)

Improvements in viral gene annotation using large language models and soft alignments. - William L. Harrigan; Barbra D. Ferrell; K. Eric Wommack; Shawn W. Polson; Zachary D. Schreiber; Mahdi Belcaid (BMC Bioinform., 2024)