Bamchop: A bioinformatics utility to summarize and visualize exome and other types of targeted resequencing data. - Zhe Zhang; Jeremy Leipzig; Ariella Sasson; Juan Carlos Perin; Michael Xie; Mahdi Sarmady; Patrick V. Warren; Peter S. White (BIBM Workshops, 2012)

Efficient digest of high-throughput sequencing data in a reproducible report. - Zhe Zhang; Jeremy Leipzig; Ariella Sasson; Angela M. Yu; Juan C. Perin; Hongbo M. Xie; Mahdi Sarmady; Patrick V. Warren; Peter S. White (BMC Bioinform., 2013)

AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies. - Pushkala Jayaraman; Timothy Mosbruger; Taishan Hu; Nikolaos G. Tairis; Chao Wu; Peter M. Clark; Monica D'arcy; Deborah Ferriola; Katarzyna Mackiewicz; Xiaowu Gai; Dimitrios Monos; Mahdi Sarmady (Bioinform., 2020)