BetaCon: Protein β-sheet Prediction Using Consensus of Predicted Superior Conformations. - Mostafa Sabzekar; Mahmoud Naghibzadeh; Majid Sazvar; Toktam Dehghani; Bahareh Behkamal; Mahdie Eghdami (ICBBS, 2017)

Protein β-sheet prediction using an efficient dynamic programming algorithm. - Mostafa Sabzekar; Mahmoud Naghibzadeh; Mahdie Eghdami; Zafer Aydin (Comput. Biol. Chem., 2017)

BetaDL: A protein beta-sheet predictor utilizing a deep learning model and independent set solution. - Toktam Dehghani; Mahmoud Naghibzadeh; Mahdie Eghdami (Comput. Biol. Medicine, 2019)

SSA: Subset sum approach to protein β-sheet structure prediction. - Mahdie Eghdami; Mahmoud Naghibzadeh (Comput. Biol. Chem., 2021)

Sparsity-aware support vector data description reinforced by expectation maximization. - Mahdie Eghdami; Hadi Sadoghi Yazdi; Neshat Salehi (Expert Syst. J. Knowl. Eng., 2022)

Accelerating long-read overlap detection for genome assembly with a two-hash table strategy. - Mahdie Eghdami; Mahmoud Naghibzadeh; Hamid Noori (Comput. Biol. Chem., 2025)