Concentration inequality for evolutionary trees. - Mahendra Mariadassou; Avner Bar-Hen (J. Multivar. Anal., 2009)

Introduction à la Phylogénie moléculaire. - Mahendra Mariadassou; Avner Bar-Hen (Monde des Util. Anal. Données, 2010)

Multiple comparative metagenomics using multiset k-mer counting. - Gaëtan Benoit; Pierre Peterlongo; Mahendra Mariadassou; Erwan Drezen; Sophie Schbath; Dominique Lavenier; Claire Lemaitre (PeerJ Comput. Sci., 2016)

FROGS: Find, Rapidly, OTUs with Galaxy Solution. - Frédéric Escudié; Lucas Auer; Maria Bernard; Mahendra Mariadassou; Laurent Cauquil; Katia Vidal; Sarah Maman; Guillermina Hernandez-Raquet; Sylvie Combes; Géraldine Pascal (Bioinform., 2018)

Variational Inference for sparse network reconstruction from count data. - Julien Chiquet; Stéphane Robin; Mahendra Mariadassou (ICML, 2019)

Tree Evaluation and Robustness Testing. - Mahendra Mariadassou; Avner Bar-Hen; Hirohisa Kishino (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

SimkaMin: fast and resource frugal de novo comparative metagenomics. - Gaëtan Benoit; Mahendra Mariadassou; Stéphane Robin; Sophie Schbath; Pierre Peterlongo; Claire Lemaitre (Bioinform., 2020)

FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers. - Maria Bernard; Olivier Rué; Mahendra Mariadassou; Géraldine Pascal (Briefings Bioinform., 2021)

Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process. - Antoine Bichat; Christophe Ambroise; Mahendra Mariadassou (Comput. Stat., 2022)

OneNet - One network to rule them all: Consensus network inference from microbiome data. - Camille Champion; Raphaëlle Momal; Emmanuelle Le Chatelier; Mathilde Sola; Mahendra Mariadassou; Magali Berland (PLoS Comput. Biol., 2024)

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data. - Cédric Midoux; Olivier Rué; Olivier Chapleur; Ariane Bize; Valentin Loux; Mahendra Mariadassou (J. Open Source Softw., 2024)