CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing. - Samuel V. Angiuoli; Malcolm Matalka; Aaron Gussman; Kevin Galens; Mahesh Vangala; David R. Riley 002; Cesar Arze; James Robert White; Owen White; W. Florian Fricke (BMC Bioinform., 2011)

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. - MacIntosh Cornwell; Mahesh Vangala; Len Taing; Zachary Herbert; Johannes Köster; Bo Li; Hanfei Sun; Taiwen Li; Jian Zhang; Xintao Qiu; Matthew Pun; Rinath Jeselsohn; et al. (BMC Bioinform., 2018)