MultiPLX: automatic grouping and evaluation of PCR primers. - Lauris Kaplinski; Reidar Andreson; Tarmo Puurand; Maido Remm (Bioinform., 2005)

Inparanoid: a comprehensive database of eukaryotic orthologs. - Kevin P. O'Brien; Maido Remm; Erik L. L. Sonnhammer (Nucleic Acids Res., 2005)

The Whole Genome TagSNP Selection and Transferability Among HapMap Populations. - Reedik Mägi; Lauris Kaplinski; Maido Remm (Pacific Symposium on Biocomputing, 2006)

GENOMEMASKER package for designing unique genomic PCR primers. - Reidar Andreson; Eric Reppo; Lauris Kaplinski; Maido Remm (BMC Bioinform., 2006)

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes. - Reidar Andreson; Tarmo Puurand; Maido Remm (Nucleic Acids Res., 2006)

Enhancements and modifications of primer design program Primer3. - Triinu Koressaar; Maido Remm (Bioinform., 2007)

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms. - Triinu Koressaar; Kai Jõers; Maido Remm (Bioinform., 2009)

ConoDictor: a tool for prediction of conopeptide superfamilies. - Dominique Koua; Age Brauer; Silja Laht; Lauris Kaplinski; Philippe Favreau; Maido Remm; Frédérique Lisacek; Reto Stöcklin (Nucleic Acids Res., 2012)

Primer3_masker: integrating masking of template sequence with primer design software. - Triinu Koressaar; Maarja Lepamets; Lauris Kaplinski; Kairi Raime; Reidar Andreson; Maido Remm (Bioinform., 2018)

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria. - Erki Aun; Age Brauer; Veljo Kisand; Tanel Tenson; Maido Remm (PLoS Comput. Biol., 2018)