Accurate detection of aneuploidies in array CGH and gene expression microarray data. - Chad L. Myers; Maitreya J. Dunham; Sun-Yuan Kung; Olga G. Troyanskaya (Bioinform., 2004)

Scalable, Dynamic Analysis and Visualization for Genomic Datasets. - Grant Wallace; Matthew A. Hibbs; Maitreya J. Dunham; Rachel S. G. Sealfon; Olga G. Troyanskaya; Kai Li 001 (IPDPS, 2007)

Viewing the Larger Context of Genomic Data through Horizontal Integration. - Matthew A. Hibbs; Grant Wallace; Maitreya J. Dunham; Kai Li 001; Olga G. Troyanskaya (IV, 2007)

Predicting Cellular Growth from Gene Expression Signatures. - Edoardo M. Airoldi; Curtis Huttenhower; David Gresham; Charles Lu 004; Amy A. Caudy; Maitreya J. Dunham; James R. Broach; David Botstein; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Systematic Planning of Genome-Scale Experiments in Poorly Studied Species. - Yuanfang Guan; Maitreya J. Dunham; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2010)

PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. - Chiann-Ling C. Yeh; Clara J. Amorosi; Soyeon Showman; Maitreya J. Dunham (Bioinform., 2022)