QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. - Sharon C. Yates; Nicolaas E. Groeneboom; Christopher Coello; Stefan F. Lichtenthaler; Peer-Hendrik Kuhn; Hans-Ulrich Demuth; Maike Hartlage-Rübsamen; Steffen Roßner; Trygve B. Leergaard; Anna Kreshuk; Maja A. Puchades; Jan G. Bjaalie (Frontiers Neuroinformatics, 2019)

Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. - Nicolaas E. Groeneboom; Sharon C. Yates; Maja A. Puchades; Jan G. Bjaalie (Frontiers Neuroinformatics, 2020)

A neuroscientist's guide to using murine brain atlases for efficient analysis and transparent reporting. - Heidi Kleven; Ingrid Reiten; Camilla H. Blixhavn; Ulrike Schlegel; Martin Øvsthus; Eszter A. Papp; Maja A. Puchades; Jan G. Bjaalie; Trygve B. Leergaard; Ingvild Elise Bjerke (Frontiers Neuroinformatics, 2023)

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. - Camilla H. Blixhavn; Ingrid Reiten; Heidi Kleven; Martin Øvsthus; Sharon C. Yates; Ulrike Schlegel; Maja A. Puchades; Oliver Schmid; Jan G. Bjaalie; Ingvild Elise Bjerke; Trygve B. Leergaard (Frontiers Neuroinformatics, 2024)