Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. - Todd Wylie; John C. Martin; Michael Dante; Makedonka Dautova Mitreva; Sandra W. Clifton; Asif T. Chinwalla; Robert H. Waterston; Richard K. Wilson; James P. McCarter (Nucleic Acids Res., 2004)

Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. - John C. Martin; Sahar Abubucker; Todd Wylie; Yong Yin; Zhengyuan Wang; Makedonka Dautova Mitreva (Nucleic Acids Res., 2009)

Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data. - John C. Martin; Sahar Abubucker; Esley Heizer; Christina M. Taylor; Makedonka Dautova Mitreva (Nucleic Acids Res., 2012)

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. - Sahar Abubucker; Nicola Segata; Johannes Goll; Alyxandria M. Schubert; Jacques Izard; Brandi L. Cantarel; Beltran Rodriguez-Mueller; Jeremy Zucker; Mathangi Thiagarajan; Bernard Henrissat; Owen White; Scott T. Kelley; et al. (PLoS Comput. Biol., 2012)

Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. - John C. Martin; Bruce A. Rosa; Philip Ozersky; Kymberlie Hallsworth-Pepin; Xu Zhang; Veena Bhonagiri-Palsikar; Rahul Tyagi; Qi Wang; Young-Jun Choi; Xin Gao; Samantha N. McNulty; Paul J. Brindley; et al. (Nucleic Acids Res., 2015)

Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations. - Mahbaneh Eshaghzadeh Torbati; Makedonka Mitreva; Vanathi Gopalakrishnan (Data, 2016)