Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. - Brett R. South; Shuying Shen; Makoto Jones; Jennifer H. Garvin; Matthew H. Samore; Wendy Webber Chapman; Adi V. Gundlapalli (BMC Bioinform., 2009)

Identification of methicillin-resistant Staphylococcus aureus within the Nation's Veterans Affairs Medical Centers using natural language processing. - Makoto Jones; Scott L. DuVall; Joshua Spuhl; Matthew H. Samore; Christopher D. Nielson; Michael A. Rubin (BMC Medical Informatics Decis. Mak., 2012)

Support For Contextual Control In Primary Care: A Qualitative Analysis. - Charlene R. Weir; Frank Drews; Jorie Butler; Makoto L. Jones; Robyn Barrus; Jonathan R. Nebeker (AMIA, 2013)

Automatic Engine for Mapping Mycobacteriology Reports to SNOMED-CT. - Olga V. Patterson; Scott D. Nelson; Makoto L. Jones; Kimberly Findley; Kevin L. Winthrop; Kevin P. Fennelly; Scott L. DuVall (AMIA, 2014)

Extraction of Vital Signs from Clinical Notes. - Olga V. Patterson; Makoto Jones; Yiwen Yao; Benjamin Viernes; Patrick R. Alba; Theodore J. Iwashyna; Scott L. DuVall (MedInfo, 2015)

Understanding complex clinical reasoning in infectious diseases for improving clinical decision support design. - Roosan Islam; Charlene R. Weir; Makoto Jones; Guilherme Del Fiol; Matthew H. Samore (BMC Medical Informatics Decis. Mak., 2015)

Big-Data Based Decision-Support Systems to Improve Clinicians' Cognition. - Don Roosan; Matthew H. Samore; Makoto Jones; Yarden Livnat; Justin Clutter (ICHI, 2016)

Feasibility of population health analytics and data visualization for decision support in the infectious diseases domain. - Guilherme Del Fiol; Jorie Butler; Yarden Livnat; Jeanmarie Mayer; Matthew H. Samore; Makoto Jones; Charlene R. Weir; Don Roosan (Appl. Clin. Inform., 2016)

Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic Heart Disease. - Junghoon Chae; Byung H. Park; Makoto Jones; Merry Ward; Jonathan R. Nebeker (CBMS, 2020)

Characterizing Sub-Cohorts via Data Normalization and Representation Learning. - Everett Neil Rush; Özgür Özmen; Kathryn Knight; Byung H. Park; Clifton Baker; Makoto Jones; Merry Ward; Jonathan R. Nebeker (CBMS, 2020)

Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. - Hannah Eyre; Alec B. Chapman; Kelly S. Peterson; Jianlin Shi; Patrick R. Alba; Makoto M. Jones; Tamara L. Box; Scott L. DuVall; Olga V. Patterson (AMIA, 2021)

Responding to a Crisis of Veteran Suicide QUICkly: A Qualitative Interdisciplinary Collaboration. - Andrea F. Kalvesmaki; Alec Chapman; Kelly S. Peterson; Mary Jo Pugh; Makoto Jones; Theresa Gleason (AMIA, 2021)

A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters. - S. M. Shamimul Hasan; Minsu Kim; Byung H. Park; Makoto M. Jones; Merry Ward; Jonathan R. Nebeker (BHI, 2021)

Topic-to-Topic Modeling for COVID-19 Mortality. - Jeffrey Humpherys; Ahmad Halwani; Barbara E. Jones; Makoto M. Jones; Matthew H. Samore; Sadiqa Mahmood; Dale Sanders (ICHI, 2021)

ReHouSED: A novel measurement of Veteran housing stability using natural language processing. - Alec B. Chapman; Audrey L. Jones; A. Taylor Kelley; Barbara E. Jones; Lori Gawron; Ann Elizabeth Montgomery; Thomas Byrne; Ying Suo; James Cook; Warren B. P. Pettey; Kelly S. Peterson; Makoto Jones; et al. (J. Biomed. Informatics, 2021)

A flexible framework for visualizing and exploring patient misdiagnosis over time. - Wathsala Widanagamaachchi; Kelly S. Peterson; Alec B. Chapman; David C. Classen; Makoto Jones (J. Biomed. Informatics, 2022)

A Linguistic Analysis Examining the Impact of COVID-19 on Pneumonia Diagnosis and Disease Models. - Alec B. Chapman; Kelly S. Peterson; Elizabeth Rutter; McKenna Nevers; Jian Ying; David C. Classen; Makoto Jones; Matthew H. Samore; Barbara E. Jones (MedInfo, 2023)

CPViz: Visualizing clinical pathways represented in higher-order networks. - Junghoon Chae; Byung H. Park; Minsu Kim; Everett Neil Rush; Özgür Özmen; Makoto Jones; Merry Ward; Jonathan R. Nebeker (Visualization and Data Analysis, 2023)

Pneumonia diagnosis performance in the emergency department: a mixed-methods study about clinicians' experiences and exploration of individual differences and response to diagnostic performance feedback. - Jorie M. Butler; Teresa Taft; Peter Taber; Elizabeth Rutter; Megan Fix; Alden Baker; Charlene R. Weir; McKenna Nevers; David C. Classen; Karen Cosby; Makoto Jones; Alec B. Chapman; et al. (J. Am. Medical Informatics Assoc., 2024)

A framework for inferring and analyzing pharmacotherapy treatment patterns. - Everett Neil Rush; Özgür Özmen; Minsu Kim; Erin Rush Ortegon; Makoto Jones; Byung H. Park; Steven Pizer; Jodie Trafton; Lisa A. Brenner; Merry Ward; Jonathan R. Nebeker (BMC Medical Informatics Decis. Mak., 2024)