ORegAnno: an open-access community-driven resource for regulatory annotation. - Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; et al. (Nucleic Acids Res., 2008)

Genomic analysis of a rare human tumor. - Steven J. M. Jones; Janessa Laskin; Yvonne Y. Li; Obi L. Griffith; Jianghong An; Mikhail Bilenky; Yaron S. N. Butterfield; Timothee Cezard; Eric Chuah; Richard Corbett; Anthony P. Fejes; Malachi Griffith; et al. (BMC Bioinform., 2010)

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. - Andrew W. McPherson; Fereydoun Hormozdiari; Abdalnasser Zayed; Ryan Giuliany; Gavin Ha; Mark G. F. Sun; Malachi Griffith; Alireza Heravi Moussavi; Janine Senz; Nataliya Melnyk; Marina Pacheco; Marco A. Marra; et al. (PLoS Comput. Biol., 2011)

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution. - Christopher A. Miller 002; Brian S. White; Nathan D. Dees; Malachi Griffith; John S. Welch; Obi L. Griffith; Ravi Vij; Michael H. Tomasson; Timothy A. Graubert; Matthew J. Walter; Matthew J. Ellis; William S. Schierding; et al. (PLoS Comput. Biol., 2014)

Genome Modeling System: A Knowledge Management Platform for Genomics. - Malachi Griffith; Obi L. Griffith; Scott M. Smith; Avinash Ramu; Matthew B. Callaway; Anthony M. Brummett; Michael J. Kiwala; Adam C. Coffman; Allison A. Regier; Benjamin J. Oberkfell; Gabriel E. Sanderson; Thomas P. Mooney; et al. (PLoS Comput. Biol., 2015)

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud. - Malachi Griffith; Jason R. Walker; Nicholas C. Spies; Benjamin J. Ainscough; Obi L. Griffith (PLoS Comput. Biol., 2015)

GenVisR: Genomic Visualizations in R. - Zachary L. Skidmore; Alex H. Wagner; Robert Lesurf; Katie M. Campbell; Jason Kunisaki; Obi L. Griffith; Malachi Griffith (Bioinform., 2016)

ORegAnno 3.0: a community-driven resource for curated regulatory annotation. - Robert Lesurf; Kelsy C. Cotto; Grace Wang; Malachi Griffith; Katayoon Kasaian; Steven J. M. Jones; Stephen B. Montgomery; Obi L. Griffith (Nucleic Acids Res., 2016)

DGIdb 2.0: mining clinically relevant drug-gene interactions. - Alex H. Wagner; Adam C. Coffman; Benjamin J. Ainscough; Nicholas C. Spies; Zachary L. Skidmore; Katie M. Campbell; Kilannin Krysiak; Deng Pan; Joshua F. McMichael; James M. Eldred; Jason R. Walker; Richard K. Wilson; et al. (Nucleic Acids Res., 2016)

ClinGen Cancer Somatic Working Group - Standardizing and democratizing access to cancer molecular diagnostic data to drive translational research. - Subha Madhavan; Deborah Ritter; Christine Micheel; Shruti Rao; Angshumoy Roy; Dmitriy Sonkin; Matthew McCoy; Malachi Griffith; Obi L. Griffith; Peter B. McGarvey; Shashikant Kulkarni (PSB, 2018)

Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. - Sharon L. Freshour; Susanna Kiwala; Kelsy C. Cotto; Adam C. Coffman; Joshua F. McMichael; Jonathan J. Song; Malachi Griffith; Obi L. Griffith; Alex H. Wagner (Nucleic Acids Res., 2021)

Bam-readcount - rapid generation of basepair-resolution sequence metrics. - Ajay Khanna; David E. Larson; Srivatsan Sridhar; Matthew Mosior; Travis E. Abbott; Susanna Kiwala; Timothy J. Ley; Eric J. Duncavage; Matthew J. Walter; Jason R. Walker; Obi L. Griffith; Malachi Griffith; et al. (J. Open Source Softw., 2022)

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. - Kilannin Krysiak; Arpad M. Danos; Jason Saliba; Joshua F. McMichael; Adam C. Coffman; Susanna Kiwala; Erica K. Barnell; Lana Sheta; Cameron J. Grisdale; Lynzey Kujan; Shahil Pema; Jake Lever; et al. (Nucleic Acids Res., 2023)

CeRTS: certainty retrieval token search in large language model clinical information extraction. - Lars E. Schimmelpfennig; Kriti Bhattarai; Inez Y. Oh; Jake Lever; Obi L. Griffith; Malachi Griffith; Albert M. Lai; Zachary B. Abrams (J. Biomed. Informatics, 2025)