SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services. - Malay Kumar Basu (Bioinform., 2001)

Domain mobility in proteins: functional and evolutionary implications. - Malay Kumar Basu; Eugenia Poliakov; Igor B. Rogozin (Briefings Bioinform., 2009)

ProPhylo: Partial Phylogenetic Profiling to guide protein family construction and assignment of biological process. - Malay Kumar Basu; Jeremy D. Selengut; Daniel H. Haft (BMC Bioinform., 2011)

TIGRFAMs and Genome Properties in 2013. - Daniel H. Haft; Jeremy D. Selengut; Roland A. Richter; Derek M. Harkins; Malay Kumar Basu; Erin Beck (Nucleic Acids Res., 2013)

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples. - Rui Tian; Malay Kumar Basu; Emidio Capriotti (Bioinform., 2014)