Assistance à la recherche dans une base d'objets complexes nuancés. - Odile Foucaut; Noureddine Mouaddib; Malika Smaïl (BDA, 1991)

Adaption par Cas des Stratégies de Recherche d'Information. - Malika Smaïl; Marion Créhange (BDA, 1993)

Case-Based Information Retrieval. - Malika Smaïl (EWCBR, 1993)

Case-Based Reasoning Meets Information Retrieval. - Malika Smaïl; Marion Créhange (RIAO, 1994)

Modèle flexible pour la recherche interactive de documents multimédias. - Brigitte Simonnot; Malika Smaïl-Tabbone (INFORSID, 1995)

Model for Interactive Retrieval of Videos and Still Images. - Brigitte Simonnot; Malika Smaïl (IW-MMDBMS, 1995)

Model for Interactive Retrieval of Videos and Still Images. - Brigitte Simonnot; Malika Smaïl (Multimedia Database Systems, 1996)

Recherche de régularités dans un mémoire de sessions de recherche d'information documentaire. - Malika Smaïl (INFORSID, 1999)

A Novel Approach for Accessing Partially Indexed Image Corpora. - Gérald Duffing; Malika Smaïl (VISUAL, 2000)

Organising and Searching Partially Indexed Image Databases. - Gérald Duffing; Malika Smaïl (ECIR, 2002)

Collecte et intégration de données biologiques hétérogènes sur le web. - Marie-Dominique Devignes; André Schaaff; Malika Smaïl (Ingénierie des Systèmes d Inf., 2002)

BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. - Malika Smaïl-Tabbone; Shazia Osman; Nizar Messai; Amedeo Napoli; Marie-Dominique Devignes (CompLife, 2005)

Méthode sémantique pour la classification et l'iinterrogation de sources de données biologiques. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (EGC (Ateliers), 2005)

Querying a Bioinformatic Data Sources Registry with Concept Lattices. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (ICCS, 2005)

Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry). - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (INFORSID, 2005)

SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. - Adrien Coulet; Malika Smaïl-Tabbone; Pascale Benlian; Amedeo Napoli; Marie-Dominique Devignes (DILS, 2006)

Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing. - Adrien Coulet; Malika Smaïl-Tabbone; Amedeo Napoli; Marie-Dominique Devignes (OTM Workshops (1), 2006)

Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (Ingénierie des Systèmes d Inf., 2006)

Traitement d'attributs inter-dépendants pour la recherche d'information par treillis. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (Actes d'IC, 2007)

Workshop PC Chairs' Message. - Marie-Dominique Devignes; Malika Smaïl-Tabbone (WISE Workshops, 2007)

Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. - Adrien Coulet; Malika Smaïl-Tabbone; Amedeo Napoli; Marie-Dominique Devignes (Description Logics, 2008)

Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (ECAI, 2008)

Extending Attribute Dependencies for Lattice-Based Querying and Navigation. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (ICCS, 2008)

BioRegistry: automatic extraction of metadata for biological database retrieval and discovery. - Marie-Dominique Devignes; Philippe Franiatte; Nizar Messai; Amedeo Napoli; Malika Smaïl-Tabbone (iiWAS, 2008)

Role Assertion Analysis: a proposed method for ontology refinement through assertion learning. - Adrien Coulet; Malika Smaïl-Tabbone; Amedeo Napoli; Marie-Dominique Devignes (STAIRS, 2008)

Ontology-guided data preparation for discovering genotype-phenotype relationships. - Adrien Coulet; Malika Smaïl-Tabbone; Pascale Benlian; Amedeo Napoli; Marie-Dominique Devignes (BMC Bioinform., 2008)

A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening. - Leo Ghemtio; Malika Smaïl-Tabbone; Marie-Dominique Devignes; Michel Souchet; Bernard Maigret (KDIR, 2009)

Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. - Sidahmed Benabderrahmane; Marie-Dominique Devignes; Malika Smaïl-Tabbone; Amedeo Napoli; Olivier Poch; Ngoc-Hoan Nguyen; Wolfgang Raffelsberger (INFORSID, 2009)

Gene-disease relationship discovery based on model-driven data integration and database view definition. - Saliha Yilmaz; Philippe Jonveaux; Cedric Bicep; Laurent Pierron; Malika Smaïl-Tabbone; Marie-Dominique Devignes (Bioinform., 2009)

Using Domain Knowledge to Guide Lattice-based Complex Data Exploration. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (ECAI, 2010)

Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes. - Nizar Messai; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (IC, 2010)

IntelliGO: a new vector-based semantic similarity measure including annotation origin. - Sidahmed Benabderrahmane; Malika Smaïl-Tabbone; Olivier Poch; Amedeo Napoli; Marie-Dominique Devignes (BMC Bioinform., 2010)

BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. - Marie-Dominique Devignes; Philippe Franiatte; Nizar Messai; Emmanuel Bresso; Amedeo Napoli; Malika Smaïl-Tabbone (Int. J. Metadata Semant. Ontologies, 2010)

Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test Case. - Leo Ghemtio; Marie-Dominique Devignes; Malika Smaïl-Tabbone; Michel Souchet; Vincent Leroux; Bernard Maigret (J. Chem. Inf. Model., 2010)

Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. - Sidahmed Benabderrahmane; Marie-Dominique Devignes; Malika Smaïl-Tabbone; Amedeo Napoli; Olivier Poch (BIBM Workshops, 2011)

Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects. - Emmanuel Bresso; Sidahmed Benabderrahmane; Malika Smaïl-Tabbone; Gino Marchetti; Arnaud Sinan Karaboga; Michel Souchet; Amedeo Napoli; Marie-Dominique Devignes (KDIR, 2011)

Spatial clustering of protein binding sites for template based protein docking. - Anisah W. Ghoorah; Marie-Dominique Devignes; Malika Smaïl-Tabbone; David W. Ritchie (Bioinform., 2011)

Formal Concept Analysis Applied to Transcriptomic Data. - Mehwish Alam; Adrien Coulet; Amedeo Napoli; Malika Smaïl-Tabbone (FCA4AI@ECAI, 2012)

Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites. - Emmanuel Bresso; Renaud Grisoni; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (KDIR, 2012)

ILP Characterization of 3D Protein-Binding Sites and FCA-Based Interpretation. - Emmanuel Bresso; Renaud Grisoni; Marie-Dominique Devignes; Amedeo Napoli; Malika Smaïl-Tabbone (IC3K, 2012)

Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. - Marie-Dominique Devignes; Sidahmed Benabderrahmane; Malika Smaïl-Tabbone; Amedeo Napoli; Olivier Poch (Int. J. Comput. Biol. Drug Des., 2012)

Clustering optimal de gènes fondé sur une mesure de similarité sémantique. - Rachid Hafiane; Malika Smaïl-Tabbone; Marie-Dominique Devignes; Salvatore Tabbone (CORIA, 2013)

Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology. - Mehwish Alam; Melisachew Wudage Chekol; Adrien Coulet; Amedeo Napoli; Malika Smaïl-Tabbone (DMoLD, 2013)

Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles. - Emmanuel Bresso; Renaud Grisoni; Gino Marchetti; Arnaud Sinan Karaboga; Michel Souchet; Marie-Dominique Devignes; Malika Smaïl-Tabbone (BMC Bioinform., 2013)

Contributions à l'extraction de connaissances à partir de données biologiques. (Contribution to knowledge extraction from biological data). - Malika Smaïl-Tabbone (2014)

Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability. - Gabin Personeni; Simon Daget; Céline Bonnet; Philippe Jonveaux; Marie-Dominique Devignes; Malika Smaïl-Tabbone; Adrien Coulet (DILS, 2014)

KBDOCK 2013: a spatial classification of 3D protein domain family interactions. - Anisah W. Ghoorah; Marie-Dominique Devignes; Malika Smaïl-Tabbone; David W. Ritchie (Nucleic Acids Res., 2014)

Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics. - Adrien Coulet; Malika Smaïl-Tabbone (ERCIM News, 2016)

Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions. - Marie-Dominique Devignes; Malika Smaïl-Tabbone; David W. Ritchie (ERCIM News, 2016)

Prédiction de défauts dans les arbres du parc végétal Grenoblois et préconisations pour les futures plantations. - Yelen Per; Kevin Dalleau; Malika Smaïl-Tabbone (EGC, 2017)

Discovering associations between adverse drug events using pattern structures and ontologies. - Gabin Personeni; Emmanuel Bresso; Marie-Dominique Devignes; Michel Dumontier; Malika Smaïl-Tabbone; Adrien Coulet (J. Biomed. Semant., 2017)

Neighborhood-Based Label Propagation in Large Protein Graphs. - Sabeur Aridhi; Seyed Ziaeddin Alborzi; Malika Smaïl-Tabbone; Marie-Dominique Devignes; David W. Ritchie (CoRR, 2017)

Exploration et analyses multi-objectifs de séries temporelles de données météorologiques. - Yelen Per; Kevin Dalleau; Malika Smaïl-Tabbone (EGC, 2018)

Unsupervised Extremely Randomized Trees. - Kevin Dalleau; Miguel Couceiro; Malika Smaïl-Tabbone (PAKDD (3), 2018)

Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. - Gabin Personeni; Marie-Dominique Devignes; Malika Smaïl-Tabbone; Philippe Jonveaux; Céline Bonnet; Adrien Coulet (SWAT4LS, 2018)

Les forêts d'arbres extrêmement aléatoires : utilisation dans un cadre non supervisé. - Kevin Dalleau; Miguel Couceiro; Malika Smaïl-Tabbone (EGC, 2019)

Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. - Pierre Monnin; Emmanuel Bresso; Miguel Couceiro; Malika Smaïl-Tabbone; Amedeo Napoli; Adrien Coulet (ALGOS, 2020)

Computing Vertex-Vertex Dissimilarities Using Random Trees: Application to Clustering in Graphs. - Kevin Dalleau; Miguel Couceiro; Malika Smaïl-Tabbone (IDA, 2020)

A comparative study of similarity-based and GNN-based link prediction approaches. - Md. Kamrul Islam; Sabeur Aridhi; Malika Smaïl-Tabbone (CoRR, 2020)

Investigating ADR mechanisms with knowledge graph mining and explainable AI. - Emmanuel Bresso; Pierre Monnin; Cédric Bousquet; François-Élie Calvier; Ndeye Coumba Ndiaye; Nadine Petitpain; Malika Smaïl-Tabbone; Adrien Coulet (CoRR, 2020)

Unsupervised extra trees: a stochastic approach to compute similarities in heterogeneous data. - Kevin Dalleau; Miguel Couceiro; Malika Smaïl-Tabbone (Int. J. Data Sci. Anal., 2020)

Simple Negative Sampling for Link Prediction in Knowledge Graphs. - Md. Kamrul Islam; Sabeur Aridhi; Malika Smaïl-Tabbone (COMPLEX NETWORKS, 2021)

Automatic Synthesis of Boolean Networks from Biological Knowledge and Data. - Athénaïs Vaginay; Taha Boukhobza; Malika Smaïl-Tabbone (OLA, 2021)

Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. - Emmanuel Bresso; Pierre Monnin; Cédric Bousquet; François-Élie Calvier; Ndeye Coumba Ndiaye; Nadine Petitpain; Malika Smaïl-Tabbone; Adrien Coulet (BMC Medical Informatics Decis. Mak., 2021)

From quantitative SBML models to Boolean networks. - Athénaïs Vaginay; Taha Boukhobza; Malika Smaïl-Tabbone (Appl. Netw. Sci., 2022)

Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. - Emmanuel Bresso; Joao-Pedro Ferreira; Nicolas Girerd; Masatake Kobayashi; Grégoire Preud'homme; Patrick Rossignol; Fayez Zannad; Marie-Dominique Devignes; Malika Smaïl-Tabbone (J. Biomed. Informatics, 2022)

Negative sampling and rule mining for explainable link prediction in knowledge graphs. - Md. Kamrul Islam; Sabeur Aridhi; Malika Smaïl-Tabbone (Knowl. Based Syst., 2022)

On the design of a similarity function for sparse binary data with application on protein function annotation. - Marcelo B. A. Veras; Bishnu Sarker; Sabeur Aridhi; João P. P. Gomes; José A. F. de Macêdo; Engelbert Mephu Nguifo; Marie-Dominique Devignes; Malika Smaïl-Tabbone (Knowl. Based Syst., 2022)

DKGR: A Distributed Framework for Geometric Knowledge Graph Embedding with Ray. - Mohammed Khatbane; Md. Kamrul Islam; Sabeur Aridhi; Malika Smaïl-Tabbone (KES, 2024)

HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. - Anna Kravchenko; Sjoerd Jacob de Vries; Malika Smaïl-Tabbone; Isaure Chauvot de Beauchêne (BMC Bioinform., 2024)

Identification automatique de marqueurs postaux dans des documents anciens de cartes postales. - Anis Amri; Malika Smaïl-Tabbone; Salvatore Tabbone (EGC, 2025)