A novel method for comparing topological models of protein structures enhanced with ligand information. - Mallika Veeramalai; David R. Gilbert (Bioinform., 2008)

TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model. - Mallika Veeramalai; Yuzhen Ye; Adam Godzik (BMC Bioinform., 2008)

An optimized TOPS+ comparison method for enhanced TOPS models. - Mallika Veeramalai; David R. Gilbert; Gabriel Valiente (BMC Bioinform., 2010)