Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors. - Mandy L. Wilson; Sakiko Okumoto; Laura Adam; Jean Peccoud (Bioinform., 2014)

EpiCaster: an integrated web application for situation assessment and forecasting of global epidemics. - Suruchi Deodhar; Jiangzhuo Chen; Mandy L. Wilson; Keith R. Bisset; Christopher L. Barrett; Madhav V. Marathe (BCB, 2015)

Flu Caster: A Pervasive Web Application for High Resolution Situation Assessment and Forecasting of Flu Outbreaks. - Suruchi Deodhar; Jiangzhuo Chen; Mandy L. Wilson; Manikandan Soundarapandian; Keith R. Bisset; Bryan L. Lewis; Christopher L. Barrett; Madhav V. Marathe (ICHI, 2015)

EpiViewer: an epidemiological application for exploring time series data. - Swapna Thorve; Mandy L. Wilson; Bryan L. Lewis; Samarth Swarup; Anil Kumar S. Vullikanti; Madhav V. Marathe (BMC Bioinform., 2018)

The Matrix: An Agent-Based Modeling Framework for Data Intensive Simulations. - Parantapa Bhattacharya; Saliya Ekanayake; Chris J. Kuhlman; Christian Lebiere; Don Morrison; Samarth Swarup; Mandy L. Wilson; Mark G. Orr (AAMAS, 2019)

From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 Surveillance. - Akhil Sai Peddireddy; Dawen Xie; Pramod Patil; Mandy L. Wilson; Dustin Machi; Srinivasan Venkatramanan; Brian Klahn; Przemyslaw J. Porebski; Parantapa Bhattacharya; Shirish Dumbre; Erin Raymond; Madhav V. Marathe (IEEE BigData, 2020)

AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US. - Parantapa Bhattacharya; Dustin Machi; Jiangzhuo Chen; Stefan Hoops; Bryan L. Lewis; Henning S. Mortveit; Srinivasan Venkatramanan; Mandy L. Wilson; Achla Marathe; Przemyslaw J. Porebski; Brian Klahn; Joseph Outten; et al. (IEEE BigData, 2021)

Scalable Epidemiological Workflows to Support COVID-19 Planning and Response. - Dustin Machi; Parantapa Bhattacharya; Stefan Hoops; Jiangzhuo Chen; Henning S. Mortveit; Srinivasan Venkatramanan; Bryan L. Lewis; Mandy L. Wilson; Arindam Fadikar; Tom Maiden; Christopher L. Barrett; Madhav V. Marathe (IPDPS, 2021)

Supporting COVID-19 Policy Response with Large-scale Mobility-based Modeling. - Serina Chang; Mandy L. Wilson; Bryan L. Lewis; Zakaria Mehrab; Komal K. Dudakiya; Emma Pierson; Pang Wei Koh; Jaline Gerardin; Beth Redbird; David Grusky; Madhav V. Marathe; Jure Leskovec (KDD, 2021)

High Performance Agent-Based Modeling to Study Realistic Contact Tracing Protocols. - Stefan Hoops; Jiangzhuo Chen; Abhijin Adiga; Bryan L. Lewis; Henning S. Mortveit; Hannah Baek; Mandy L. Wilson; Dawen Xie; Samarth Swarup; Srinivasan Venkatramanan; Justin Crow; Elena Diskin; et al. (WSC, 2021)

Data-Driven Real-Time Strategic Placement of Mobile Vaccine Distribution Sites. - Zakaria Mehrab; Mandy L. Wilson; Serina Chang; Galen Harrison; Bryan L. Lewis; Alex Telionis; Justin Crow; Dennis Kim; Scott Spillmann; Kate Peters; Jure Leskovec; Madhav V. Marathe (AAAI, 2022)

Effective Social Network-Based Allocation of COVID-19 Vaccines. - Jiangzhuo Chen; Stefan Hoops; Achla Marathe; Henning S. Mortveit; Bryan L. Lewis; Srinivasan Venkatramanan; Arash Haddadan; Parantapa Bhattacharya; Abhijin Adiga; Anil Vullikanti; Aravind Srinivasan; Mandy L. Wilson; et al. (KDD, 2022)

Synthetic Information and Digital Twins for Pandemic Science: Challenges and Opportunities. - Galen Harrison; Przemyslaw J. Porebski; Jiangzhuo Chen; Mandy L. Wilson; Henning S. Mortveit; Parantapa Bhattacharya; Dawen Xie; Stefan Hoops; Anil Vullikanti; Li Xiong; James Joshi; Madhav V. Marathe (TPS-ISA, 2023)

A Machine Learning Framework to Explain Complex Geospatial Simulations: A Climate Change Case Study. - Tanvir Ferdousi; Abhijin Adiga; Mandy L. Wilson; S. S. Ravi; Anil Vullikanti; Madhav V. Marathe; Samarth Swarup; Mingliang Liu; Kirti Rajagopalan; Jennifer Adam (WSC, 2023)

Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support. - Parantapa Bhattacharya; Jiangzhuo Chen; Stefan Hoops; Dustin Machi; Bryan L. Lewis; Srinivasan Venkatramanan; Mandy L. Wilson; Brian Klahn; Aniruddha Adiga; Benjamin Hurt; Joseph Outten; Abhijin Adiga; et al. (Int. J. High Perform. Comput. Appl., 2023)

Value-based Resource Matching with Fairness Criteria: Application to Agricultural Water Trading. - Abhijin Adiga; Yohai Trabelsi; Tanvir Ferdousi; Madhav V. Marathe; S. S. Ravi; Samarth Swarup; Anil Kumar S. Vullikanti; Mandy L. Wilson; Sarit Kraus; Reetwika Basu; Supriya Savalkar; Matthew Yourek; et al. (AAMAS, 2024)

A High-Resolution, US-scale Digital Similar of Interacting Livestock, Wild Birds, and Human Ecosystems with Applications to Multi-host Epidemic Spread. - Abhijin Adiga; Ayush Chopra; Mandy L. Wilson; S. S. Ravi; Dawen Xie; Samarth Swarup; Bryan Lewis 001; Ramesh Raskar; Madhav V. Marathe (CoRR, 2024)

Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread. - Parantapa Bhattacharya; Dustin Machi; Jiangzhuo Chen; Stefan Hoops; Bryan Lewis 001; Henning S. Mortveit; Srinivasan Venkatramanan; Mandy L. Wilson; Achla Marathe; Przemyslaw J. Porebski; Brian Klahn; Joseph Outten; et al. (J. Parallel Distributed Comput., 2024)

IrrMap: A Large-Scale Comprehensive Dataset for Irrigation Method Mapping. - Nibir Chandra Mandal; Oishee Bintey Hoque; Abhijin Adiga; Samarth Swarup; Mandy L. Wilson; Lu Feng; Yangfeng Ji; Miaomiao Zhang; Geoffrey C. Fox; Madhav V. Marathe (CoRR, 2025)