BhairPred: prediction of ß-hairpins in a protein from multiple alignment information using ANN and SVM techniques. - Manish Kumar 005; Manoj Bhasin; Navjot K. Natt; G. P. S. Raghava (Nucleic Acids Res., 2005)

Identification of DNA-binding proteins using support vector machines and evolutionary profiles. - Manish Kumar 005; M. Michael Gromiha; Gajendra P. S. Raghava (BMC Bioinform., 2007)

COPid: Composition Based Protein Identification. - Manish Kumar 005; Varun Thakur; Gajendra P. S. Raghava (Silico Biol., 2008)

Prediction of nuclear proteins using SVM and HMM models. - Manish Kumar 005; Gajendra P. S. Raghava (BMC Bioinform., 2009)

Prediction of Polyadenylation Signals in Human DNA Sequences using Nucleotide Frequencies. - Firoz Ahmed; Manish Kumar 005; Gajendra P. S. Raghava (Silico Biol., 2009)

LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase. - Djamel Harbi; Manish Kumar 005; Paul M. Harrison (Database J. Biol. Databases Curation, 2011)

CBMAR: a comprehensive β-lactamase molecular annotation resource. - Abhishikha Srivastava; Neelja Singhal; Manisha Goel; Jugsharan Singh Virdi; Manish Kumar 005 (Database J. Biol. Databases Curation, 2014)

Prediction of Rare Palmitoylation Events in Proteins. - Bandana Kumari; Ravindra Kumar; Manish Kumar 005 (J. Comput. Biol., 2018)

Identifying residues that determine palmitoylation using association rule mining. - Bandana Kumari; Ravindra Kumar; Manish Kumar 005 (Bioinform., 2019)

mRNALoc: a novel machine-learning based in-silico tool to predict mRNA subcellular localization. - Anjali Garg; Neelja Singhal; Ravindra Kumar; Manish Kumar 005 (Nucleic Acids Res., 2020)

Identification of chloroplast and sub-chloroplast proteins from sequence-attributed features using support vector machine and domain information. - Ravindra Kumar; Anjali Garg; Bandana Kumari; Aakriti Jain; Manish Kumar 005; Equal Contribution (CIBCB, 2021)

Discerning novel drug targets for treating Mycobacterium avium ss. paratuberculosis-associated autoimmune disorders: an in silico approach. - Anjali Garg; Neelja Singhal; Manish Kumar 005 (Briefings Bioinform., 2021)

AFRbase: a database of protein mutations responsible for antifungal resistance. - Aakriti Jain; Neelja Singhal; Manish Kumar 005 (Bioinform., 2023)