Toward In Vivo Disease Diagnosis and Treatment Using DNA. - Yuriy Brun; Manoj Gopalkrishnan (BIOCOMP, 2006)

A projection argument for differential inclusions, with applications to persistence of mass-action kinetics - Manoj Gopalkrishnan; Ezra Miller; Anne Shiu (CoRR, 2012)

Autocatalysis in Reaction Networks. - Abhishek Deshpande; Manoj Gopalkrishnan (CoRR, 2013)

The Hot Bit I: The Szilard-Landauer Correspondence. - Manoj Gopalkrishnan (CoRR, 2013)

A coercion-resistant protocol for conducting elections by telephone - Manoj Gopalkrishnan (CoRR, 2013)

A Cost/ Speed/ Reliability Trade-off in Erasing a Bit. - Manoj Gopalkrishnan (CoRR, 2014)

Playing games in an uncertain world. - Manoj Gopalkrishnan; Girish Varma (CoRR, 2014)

A Geometric Approach to the Global Attractor Conjecture. - Manoj Gopalkrishnan; Ezra Miller; Anne Shiu (SIAM J. Appl. Dyn. Syst., 2014)

A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models. - Manoj Gopalkrishnan (DNA, 2016)

A Bayesian view of single-qubit clocks, and an energy versus accuracy tradeoff. - Manoj Gopalkrishnan; Abhishek Deshpande; Varshith Kandula; Praveen Sriram (ISIT, 2016)

A Bayesian view of Single-Qubit Clocks, and an Energy versus Accuracy tradeoff. - Manoj Gopalkrishnan; Varshith Kandula; Praveen Sriram; Abhishek Deshpande; Bhaskaran Muralidharan (CoRR, 2016)

A Cost/Speed/Reliability Tradeoff to Erasing. - Manoj Gopalkrishnan (Entropy, 2016)

Chemical Boltzmann Machines. - William Poole; Andrés Ortiz-Muñoz; Abhishek Behera; Nick S. Jones; Thomas E. Ouldridge; Erik Winfree; Manoj Gopalkrishnan (DNA, 2017)

A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations. - Muppirala Viswa Virinchi; Abhishek Behera; Manoj Gopalkrishnan (DNA, 2017)

A Reaction Network Scheme Which Implements the EM Algorithm. - Muppirala Viswa Virinchi; Abhishek Behera; Manoj Gopalkrishnan (DNA, 2018)

A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models. - Abhinav Singh; Carsten Wiuf; Abhishek Behera; Manoj Gopalkrishnan (DNA, 2019)

Active Inference for Stochastic Control. - Aswin Paul; Noor Sajid; Manoj Gopalkrishnan; Adeel Razi (PKDD/ECML Workshops (1), 2021)

Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines. - William Poole; Thomas E. Ouldridge; Manoj Gopalkrishnan; Erik Winfree (CoRR, 2022)

Autonomous Learning of Generative Models with Chemical Reaction Network Ensembles. - William Poole; Thomas E. Ouldridge; Manoj Gopalkrishnan (CoRR, 2023)