Lost in translation: an assessment and perspective for computational microRNA target identification. - Panagiotis Alexiou; Manolis Maragkakis; Giorgos L. Papadopoulos; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

DIANA-mirPath: Integrating human and mouse microRNAs in pathways. - Giorgos L. Papadopoulos; Panagiotis Alexiou; Manolis Maragkakis; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

Accurate microRNA target prediction correlates with protein repression levels. - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas 001; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

DIANA-microT web server: elucidating microRNA functions through target prediction. - Manolis Maragkakis; Martin Reczko; Victor A. Simossis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Theodore Dalamagas 001; Giorgos Giannopoulos; Georgios I. Goumas; Evangelos Koukis; Kornilios Kourtis; Thanasis Vergoulis; Nectarios Koziris; et al. (Nucleic Acids Res., 2009)

Predicting miRNA targets utilizing an Extended Profile HMM. - Jan Grau; Daniel Arend; Ivo Grosse; Artemis G. Hatzigeorgiou; Jens Keilwagen; Manolis Maragkakis; Claus Weinholdt; Stefan Posch (GCB, 2010)

FreePub: Collecting and Organizing Scientific Material Using Mindmaps. - Theodore Dalamagas 001; Tryfon Farmakakis; Manolis Maragkakis; Artemis G. Hatzigeorgiou (SWAT4LS, 2010)

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. - Manolis Maragkakis; Thanasis Vergoulis; Panagiotis Alexiou; Martin Reczko; Kyriaki Plomaritou; Mixail Gousis; Kornilios Kourtis; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2011)

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. - Thanasis Vergoulis; Michail Alexakis; Theodore Dalamagas 001; Manolis Maragkakis; Artemis G. Hatzigeorgiou; Timos K. Sellis (SSDBM, 2012)

Functional microRNA targets in protein coding sequences. - Martin Reczko; Manolis Maragkakis; Panagiotis Alexiou; Ivo Grosse; Artemis G. Hatzigeorgiou (Bioinform., 2012)

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. - Ioannis S. Vlachos; Nikos Kostoulas; Thanasis Vergoulis; Georgios K. Georgakilas; Martin Reczko; Manolis Maragkakis; Maria D. Paraskevopoulou; Kostantinos Prionidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Martin Reczko; Manolis Maragkakis; Theodore M. Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

bíogo: a simple high-performance bioinformatics toolkit for the Go language. - R. Daniel Kortschak; Josh Bleecher Snyder; Manolis Maragkakis; David L. Adelson (J. Open Source Softw., 2017)

SamQL: a structured query language and filtering tool for the SAM/BAM file format. - Christopher T. Lee; Manolis Maragkakis (BMC Bioinform., 2021)