Cell Subclass Identification in Single-Cell RNA-Sequencing Data Using Orthogonal Nonnegative Matrix Factorization. - Shuai Wang 033; Peng Wu; Manqi Zhou; Tsung-Hui Chang; Song Wu (ICASSP, 2018)

Cell ontology guided transcriptome foundation model. - Xinyu Yuan; Zhihao Zhan; Zuobai Zhang; Manqi Zhou; Jianan Zhao 002; Boyu Han; Yue Li; Jian Tang 005 (NeurIPS, 2024)

Joint Analysis of Single-Cell Data across Cohorts with Missing Modalities. - Marianne Arriola; Weishen Pan; Manqi Zhou; Qiannan Zhang; Chang Su; Fei Wang (CoRR, 2024)

Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data. - Chang Su 002; Yu Hou; Jielin Xu; Zhenxing Xu; Manqi Zhou; Alison Ke; Haoyang Li 001; Jie Xu 012; Matthew Brendel; Jacqueline R. M. A. Maasch; Zilong Bai; Haotan Zhang; et al. (npj Digit. Medicine, 2024)

Identifying progression subphenotypes of Alzheimer's disease from large-scale electronic health records with machine learning. - Manqi Zhou; Alice S. Tang; Hao Zhang; Zhenxing Xu; Alison M. C. Ke; Chang Su; Yu Huang 018; William G. Mantyh; Michael Jaffee; Katherine P. Rankin; Steven DeKosky; Jiayu Zhou; et al. (J. Biomed. Informatics, 2025)