MCluster-VAEs: An end-to-end variational deep learning-based clustering method for subtype discovery using multi-omics data. - Zhiwei Rong; Zhilin Liu; Jiali Song; Lei Cao; Yipe Yu; Mantang Qiu; Yan Hou (Comput. Biol. Medicine, 2022)

E2EFP-MIL: End-to-end and high-generalizability weakly supervised deep convolutional network for lung cancer classification from whole slide image. - Lei Cao; Jie Wang; Yuanyuan Zhang; Zhiwei Rong; Meng Wang; Liuying Wang; Jianxin Ji; Youhui Qian; Liuchao Zhang; Hao Wu; Jiali Song; Zheng Liu; et al. (Medical Image Anal., 2023)

Single-cell mosaic integration and cell state transfer with auto-scaling self-attention mechanism. - Zhiwei Rong; Jiali Song; Yipe Yu; Lan Mi; Mantang Qiu; Yuqin Song; Yan Hou (Briefings Bioinform., 2024)