Assessing association between protein truncating variants and quantitative traits. - Manuel A. Rivas; Matti Pirinen; Matthew J. Neville; Kyle J. Gaulton; Loukas Moutsianas; Cecilia M. Lindgren; Fredrik Karpe; Mark I. McCarthy; Peter Donnelly (Bioinform., 2013)

Assessing allele-specific expression across multiple tissues from RNA-seq read data. - Matti Pirinen; Tuuli Lappalainen; Noah A. Zaitlen; Emmanouil T. Dermitzakis; Peter Donnelly; Mark I. McCarthy; Manuel A. Rivas (Bioinform., 2015)

biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements. - Matti Pirinen; Christian Benner; Pekka Marttinen; Marjo-Riitta Järvelin; Manuel A. Rivas; Samuli Ripatti (Bioinform., 2017)

DeepTag: inferring all-cause diagnoses from clinical notes in under-resourced medical domain. - Allen Nie; Ashley Zehnder; Rodney López Page; Arturo L. Pineda; Manuel A. Rivas; Carlos D. Bustamante; James Zou 001 (CoRR, 2018)

DeepTag: inferring diagnoses from veterinary clinical notes. - Allen Nie; Ashley Zehnder; Rodney López Page; Yuhui Zhang; Arturo López Pineda; Manuel A. Rivas; Carlos D. Bustamante; James Zou 001 (npj Digit. Medicine, 2018)

Global Biobank Engine: enabling genotype-phenotype browsing for biobank summary statistics. - Gregory McInnes; Yosuke Tanigawa; Chris DeBoever; Adam Lavertu; Julia Eve Olivieri; Matthew Aguirre; Manuel A. Rivas (Bioinform., 2019)

Efficient Computation and Analysis of Distributional Shapley Values. - Yongchan Kwon; Manuel A. Rivas; James Zou 001 (AISTATS, 2021)

Survival analysis on rare events using group-regularized multi-response Cox regression. - Ruilin Li; Yosuke Tanigawa; Johanne M. Justesen; Jonathan Taylor; Trevor Hastie; Robert Tibshirani; Manuel A. Rivas (Bioinform., 2021)

Fast numerical optimization for genome sequencing data in population biobanks. - Ruilin Li; Christopher Chang; Yosuke Tanigawa; Balasubramanian Narasimhan; Trevor Hastie; Robert Tibshirani; Manuel A. Rivas (Bioinform., 2021)

Using Pre-training and Interaction Modeling for ancestry-specific disease prediction in UK Biobank. - Thomas Le Menestrel; Erin Craig; Robert Tibshirani; Trevor Hastie; Manuel A. Rivas (CoRR, 2024)

Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking. - Thomas Le Menestrel; Manuel A. Rivas (CoRR, 2024)