Constructing a Useful Tool for Characterizing Amino Acid Conformers by Means of Quantum Chemical and Graph Theory Indices. - Constanza Cárdenas; Mateo Obregón; Eugenio-José Llanos; Eduardo Machado; Hugo-Javier Bohórquez; José-Luis Villaveces; Manuel-Elkin Patarroyo (Comput. Chem., 2002)

Validating subcellular localization prediction tools with mycobacterial proteins. - Daniel Restrepo-Montoya; Carolina Vizcaíno; Luis F. Niño; Marisol Ocampo; Manuel-Elkin Patarroyo; Manuel A. Patarroyo (BMC Bioinform., 2009)

Computational Prediction and Experimental Assessment of Secreted/Surface Proteins from Mycobacterium tuberculosis H37Rv. - Carolina Vizcaíno; Daniel Restrepo-Montoya; Diana Rodríguez; Luis F. Niño; Marisol Ocampo; Magnolia Vanegas; María T. Reguero; Nora L. Martínez; Manuel-Elkin Patarroyo; Manuel A. Patarroyo (PLoS Comput. Biol., 2010)

NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins. - Daniel Restrepo-Montoya; Camilo Pino; Luis F. Niño; Manuel-Elkin Patarroyo; Manuel A. Patarroyo (BMC Bioinform., 2011)

How frequently do clusters occur in hierarchical clustering analysis? A graph theoretical approach to studying ties in proximity. - Wilmer Leal; Eugenio-José Llanos; Guillermo Restrepo; Carlos F. Suárez; Manuel-Elkin Patarroyo (J. Cheminformatics, 2016)

Assessing Peptide Binding to MHC II: An Accurate Semiempirical Quantum Mechanics Based Proposal. - Carlos A. Ortiz-Mahecha; Hugo-Javier Bohórquez; William A. Agudelo; Manuel A. Patarroyo; Manuel-Elkin Patarroyo; Carlos F. Suárez (J. Chem. Inf. Model., 2019)

MHCBI: a pipeline for calculating peptide-MHC binding energy using semi-empirical quantum mechanical methods with explicit/implicit solvent models. - Carlos A. Ortiz-Mahecha; William A. Agudelo; Manuel A. Patarroyo; Manuel-Elkin Patarroyo; Carlos F. Suárez (Briefings Bioinform., 2021)