The Cerebellum Chip: an Analog VLSI Implementation of a Cerebellar Model of Classical Conditioning. - Constanze Hofstoetter; Manuel Gil; Kynan Eng; Giacomo Indiveri; Matti Mintz; Jörg Kramer; Paul F. M. J. Verschure (NIPS, 2004)

OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements. - Christophe Dessimoz; Gina Cannarozzi; Manuel Gil; Daniel Margadant; Alexander C. J. Roth; Adrian Schneider; Gaston H. Gonnet (Comparative Genomics, 2005)

A Dimensionless Fit Measure for Phylogenetic Distance Trees. - Manuel Gil; Christophe Dessimoz; Gaston H. Gonnet (J. Bioinform. Comput. Biol., 2005)

Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences. - Christophe Dessimoz; Manuel Gil; Adrian Schneider; Gaston H. Gonnet (BMC Bioinform., 2006)

A Repetition Test for Pseudo-Random Number Generators. - Manuel Gil; Gaston H. Gonnet; Wesley P. Petersen (Monte Carlo Methods Appl., 2006)

Aerosol Lidar Intercomparison in the Framework of SPALINET - The Spanish Lidar Network: Methodology and Results. - Michaël Sicard; Francisco Molero; Juan Luis Guerrero-Rascado; Roberto Pedrós; Francisco Javier Expósito; Carmen Córdoba-Jabonero; José Miguel Bolarín; Adolfo Comerón; Francesc Rocadenbosch; Manuel Pujadas; Lucas Alados-Arboledas; José A. Martínez-Lozano; et al. (IEEE Trans. Geosci. Remote. Sens., 2009)

Rényi divergence measures for commonly used univariate continuous distributions. - Manuel Gil; Fady Alajaji; Tamás Linder (Inf. Sci., 2013)

Progressive multiple sequence alignment with indel evolution. - Massimo Maiolo; Xiaolei Zhang; Manuel Gil; Maria Anisimova (BMC Bioinform., 2018)

Towards a Knowledge-Based Recommender System for Linking Electronic Patient Records With Continuing Medical Education Information at the Point of Care. - Manuel Gil; Reem El Sherif; Manon Pluye; Benjamin C. M. Fung; Roland M. Grad; Pierre Pluye (IEEE Access, 2019)

Enabling semantic queries across federated bioinformatics databases. - Ana Claudia Sima; Tarcisio Mendes de Farias; Erich Zbinden; Maria Anisimova; Manuel Gil; Heinz Stockinger; Kurt Stockinger; Marc Robinson-Rechavi; Christophe Dessimoz (Database J. Biol. Databases Curation, 2019)

ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process. - Massimo Maiolo; Lorenzo Gatti; Diego Frei; Tiziano Leidi; Manuel Gil; Maria Anisimova (BMC Bioinform., 2021)

Querying knowledge graphs in natural language. - Shiqi Liang; Kurt Stockinger; Tarcisio Mendes de Farias; Maria Anisimova; Manuel Gil (J. Big Data, 2021)

Ontology-Aware Biomedical Relation Extraction. - Ahmad Aghaebrahimian; Maria Anisimova; Manuel Gil (TSD, 2022)

Computational Literature-based Discovery for Natural Products Research: Current State and Future Prospects. - Andreas Lardos; Ahmad Aghaebrahimian; Anna Koroleva; Julia Sidorova; Evelyn Wolfram; Maria Anisimova; Manuel Gil (Frontiers Bioinform., 2022)

Single-character insertion-deletion model preserves long indels in ancestral sequence reconstruction. - Gholamhossein Jowkar; Julija Pecerska; Manuel Gil; Maria Anisimova (BMC Bioinform., 2024)