A compendium of RNA-binding motifs for decoding gene regulation. - Debashish Ray; Hilal Kazan; Kate B. Cook; Matthew T. Weirauch; Hamed S. Najafabadi; Xiao Li; Serge Gueroussov; Mihai Albu; Hong Zheng; Ally Yang; Hong Na; Manuel Irimia; et al. (Nat., 2013)

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing. - Recep Colak; TaeHyung Kim; Magali Michaut; Mark G. F. Sun; Manuel Irimia; Jeremy Bellay; Chad L. Myers; Benjamin J. Blencowe; Philip M. Kim (PLoS Comput. Biol., 2013)

Stability Depends on Positive Autoregulation in Boolean Gene Regulatory Networks. - Ricardo Pinho; Victor Garcia; Manuel Irimia; Marcus W. Feldman (PLoS Comput. Biol., 2014)

Matt: Unix tools for alternative splicing analysis. - André Gohr; Manuel Irimia (Bioinform., 2019)