cudaMap: a GPU accelerated program for gene expression connectivity mapping. - Darragh G. McArt; Peter Bankhead; Philip D. Dunne; Manuel Salto-Tellez; Peter Hamilton; Shu-Dong Zhang (BMC Bioinform., 2013)

samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files. - Alexey Stupnikov; Shailesh Tripathi; Ricardo de Matos Simoes; Darragh G. McArt; Manuel Salto-Tellez; Galina V. Glazko; Matthias Dehmer; Frank Emmert-Streib (Bioinform., 2016)

Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned. - Gerald Li; Peter Bankhead; Philip D. Dunne; Paul G. O'Reilly; Jacqueline A. James; Manuel Salto-Tellez; Peter Hamilton; Darragh G. McArt (Briefings Bioinform., 2017)

ICOS Protein Expression Segmentation: Can Transformer Networks Give Better Results? - Vivek Kumar Singh; Paul G. O'Reilly; Jacqueline A. James; Manuel Salto-Tellez; Perry Maxwell (CoRR, 2022)

Fully transformer-based biomarker prediction from colorectal cancer histology: a large-scale multicentric study. - Sophia J. Wagner; Daniel Reisenbüchler; Nicholas P. West; Jan Moritz Niehues; Gregory Patrick Veldhuizen; Philip Quirke; Heike Irmgard Grabsch; Piet A. van den Brandt; Gordon G. A. Hutchins; Susan D. Richman; Tanwei Yuan; Rupert Langer; et al. (CoRR, 2023)

Autonomous Artificial Intelligence Agents for Clinical Decision Making in Oncology. - Dyke Ferber; Omar S. M. El Nahhas; Georg Wölflein; Isabella C. Wiest; Jan Clusmann; Marie-Elisabeth Leßman; Sebastian Foersch; Jacqueline Lammert; Maximilian Tschochohei; Dirk Jäger; Manuel Salto-Tellez; Nikolaus Schultz; et al. (CoRR, 2024)

Encrypted federated learning for secure decentralized collaboration in cancer image analysis. - Daniel Truhn; Soroosh Tayebi Arasteh; Oliver Lester Saldanha; Gustav Müller-Franzes; Firas Khader; Philip Quirke; Nicholas P. West; Richard Gray 005; Gordon G. A. Hutchins; Jacqueline A. James; Maurice B. Loughrey; Manuel Salto-Tellez; et al. (Medical Image Anal., 2024)