Parallel WZ factorization on mesh multiprocessors. - Rafael Asenjo; Manuel Ujaldon; Emilio L. Zapata (Microprocess. Microprogramming, 1993)

3d Reconstruction Of Macromolecules On Multiprocessors. - Manuel Ujaldon; Rafael Asenjo; Emilio L. Zapata; José Carlos Cabaleiro; José María Carazo (PDP, 1994)

Efficient Resolution of Sparse Indirections in Data-Parallel Compilers. - Manuel Ujaldon; Emilio L. Zapata (International Conference on Supercomputing, 1995)

New data-parallel language features for sparse matrix computations. - Manuel Ujaldon; Emilio L. Zapata; Barbara M. Chapman; Hans P. Zima (IPPS, 1995)

Run-Time Techniques for Parallelizing Sparse Matrix Problems. - Manuel Ujaldon; Shamik D. Sharma; Joel H. Saltz; Emilio L. Zapata (IRREGULAR, 1995)

Data-parallel Language Features for Sparse Codes. - Manuel Ujaldón; Emilio L. Zapata; Barbara M. Chapman; Hans P. Zima (LCR, 1995)

Experimental Evaluation of Efficient Sparse Matrix Distributions. - Manuel Ujaldon; Shamik D. Sharma; Emilio L. Zapata; Joel H. Saltz (International Conference on Supercomputing, 1996)

Parallelization Techniques for Sparse Matrix Applications. - Manuel Ujaldon; Emilio L. Zapata; Shamik D. Sharma; Joel H. Saltz (J. Parallel Distributed Comput., 1996)

The Sparse Cyclic Distribution against its Dense Counterparts. - Gerardo Bandera; Manuel Ujaldon; María A. Trenas; Emilio L. Zapata (IPPS, 1997)

Page Replacement Using Marginal Loss Functions. - Manuel Ujaldon; Shamik D. Sharma; Joel H. Saltz (SC, 1997)

Vienna-Fortran/HPF Extensions for Sparse and Irregular Problems and Their Compilation. - Manuel Ujaldon; Emilio L. Zapata; Barbara M. Chapman; Hans P. Zima (IEEE Trans. Parallel Distributed Syst., 1997)

Enhancing the Parallelization of Sparse Matrices through Dynamic Issues. - Gerardo Bandera; Manuel Ujaldon; Emilio L. Zapata (PDPTA, 1999)

Compile and Run-Time Support for the Parallelization of Sparse Matrix Updating Algorithms. - Gerardo Bandera; Manuel Ujaldon; Emilio L. Zapata (J. Supercomput., 2000)

The GPU on irregular computing: performance issues and contributions. - Manuel Ujaldon; Joel H. Saltz (CAD/Graphics, 2005)

Exploiting Parallelism on Irregular Applications Using the GPU. - Manuel Ujaldon; Joel H. Saltz (PARCO, 2005)

The GPU as an indirection engine for a fast information retrieval. - Manuel Ujaldon; Joel H. Saltz (Int. J. Electron. Bus., 2005)

The GPU on biomedical image processing for color and phenotype analysis. - Antonio Ruiz; Manuel Ujaldon; Jose Antonio Andrades; Jose Becerra; Kun Huang 001; Tony Pan; Joel H. Saltz (BIBE, 2007)

Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma. - Antonio Ruiz; Olcay Sertel; Manuel Ujaldon; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (BIBM, 2007)

Using Graphics Hardware for Enhancing Edge and Circle Detection. - Antonio Ruiz; Manuel Ujaldon; Nicolás Guil (IbPRIA (2), 2007)

Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs. - Ümit V. Çatalyürek; Timothy D. R. Hartley; Olcay Sertel; Manuel Ujaldon; Antonio Ruiz; Joel H. Saltz; Metin N. Gurcan (High Performance Computing Workshop, 2008)

Biomedical image analysis on a cooperative cluster of GPUs and multicores. - Timothy D. R. Hartley; Ümit V. Çatalyürek; Antonio Ruiz; Francisco D. Igual; Rafael Mayo 002; Manuel Ujaldon (ICS, 2008)

Pathological image segmentation for neuroblastoma using the GPU. - Antonio Ruiz; Jun Kong 002; Manuel Ujaldon; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (ISBI, 2008)

Recognition of circular patterns on GPUs: Performance analysis and contributions. - Antonio Ruiz; Nicolás Guil; Manuel Ujaldon (J. Parallel Distributed Comput., 2008)

On the computation of the Circle Hough Transform by a GPU rasterizer. - Manuel Ujaldon; Antonio Ruiz; Nicolás Guil (Pattern Recognit. Lett., 2008)

High Performance Circle Detection through a GPU Rasterization Approach. - Manuel Ujaldon; Nicolás Guil (IbPRIA, 2009)

High-performance signal processing on emerging many-core architectures using cuda. - Manuel Ujaldon; Ümit V. Çatalyürek (ICME, 2009)

GPU acceleration of Zernike moments for large-scale images. - Manuel Ujaldon (IPDPS, 2009)

The GPU on the Matrix-Matrix Multiply: Performance Study and Contributions. - José M. Cecilia; José M. García 001; Manuel Ujaldon (PARCO, 2009)

Exploring the GPU for Enhancing Parallelism on Color and Texture Analysis. - Francisco D. Igual; Rafael Mayo 002; Timothy D. R. Hartley; Ümit V. Çatalyürek; Antonio Ruiz; Manuel Ujaldon (PARCO, 2009)

Stroma classification for neuroblastoma on graphics processors. - Antonio Ruiz; Olcay Sertel; Manuel Ujaldon; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (Int. J. Data Min. Bioinform., 2009)

Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors. - Antonio Ruiz; Manuel Ujaldon; Lee Cooper 001; Kun Huang 001 (J. Signal Process. Syst., 2009)

CUDA 2D Stencil Computations for the Jacobi Method. - José M. Cecilia; José M. García 001; Manuel Ujaldon (PARA (1), 2010)

Parallel 3D fast wavelet transform on manycore GPUs and multicore CPUs. - Joaquín Franco; Gregorio Bernabé; Juan Fernández 001; Manuel Ujaldon (ICCS, 2010)

High Performance Computation of Moments for an Accurate Classification of Bone Tissue Images. - Manuel Jesús Martín-Requena; Manuel Ujaldon (HPCC, 2011)

Using Graphics Processors for a High Performance Normalization of Gene Expressions. - Andrés Rodríguez Moreno; Oswaldo Trelles; Manuel Ujaldon (HPCC, 2011)

Parallelization Strategies for Ant Colony Optimisation on GPUs. - José M. Cecilia; José M. García 001; Manuel Ujaldon; Andy Nisbet; Martyn Amos (IPDPS Workshops, 2011)

Parallel Automatic Registration of Large Scale Microscopic Images on Multiprocessor CPUs and GPUs. - Lee Cooper 001; Kun Huang 001; Manuel Ujaldon (IPDPS Workshops, 2011)

Color and texture analysis using emerging parallel architectures. - Francisco D. Igual; Rafael Mayo 002; Timothy D. R. Hartley; Ümit V. Çatalyürek; Antonio Ruiz; Manuel Ujaldon (Int. J. High Perform. Comput. Appl., 2011)

HPCS 2012 tutorials: Tutorial I: High performance computing in biomedical informatics. - Hesham H. Ali; Laura Ricci; Italo Epicoco; Manuel Ujaldon; Jonathan Passerat-Palmbach; David R. C. Hill; Manuel Villén-Altamirano (HPCS, 2012)

High performance computing and simulations on the GPU using CUDA. - Manuel Ujaldon (HPCS, 2012)

Color and texture analysis on emerging parallel architectures. - Francisco D. Igual; Rafael Mayo 002; Timothy D. R. Hartley; Ümit V. Çatalyürek; Antonio Ruiz; Manuel Ujaldon (Int. J. High Perform. Comput. Appl., 2012)

The 2D wavelet transform on emerging architectures: GPUs and multicores. - Joaquín Franco; Gregorio Bernabé; Juan Fernández 001; Manuel Ujaldon (J. Real Time Image Process., 2012)

The GPU on the simulation of cellular computing models. - José M. Cecilia; José M. García 001; Ginés D. Guerrero; Miguel A. Martínez-del-Amor; Mario J. Pérez-Jiménez; Manuel Ujaldon (Soft Comput., 2012)

Stencil computations on heterogeneous platforms for the Jacobi method: GPUs versus Cell BE. - José M. Cecilia; José L. Abellán; Juan Fernández 001; Manuel E. Acacio; José M. García 001; Manuel Ujaldon (J. Supercomput., 2012)

Enhancing data parallelism for Ant Colony Optimization on GPUs. - José M. Cecilia; José M. García 001; Andy Nisbet; Martyn Amos; Manuel Ujaldon (J. Parallel Distributed Comput., 2013)

Enhancing GPU parallelism in nature-inspired algorithms. - José M. Cecilia; Andy Nisbet; Martyn Amos; José M. García 001; Manuel Ujaldon (J. Supercomput., 2013)

Author's retrospective for biomedical image analysis on a cooperative cluster of gpus and multicores. - Timothy D. R. Hartley; Ümit V. Çatalyürek; Antonio Ruiz; Francisco D. Igual; Rafael Mayo 002; Manuel Ujaldon (ICS 25th Anniversary, 2014)

Entropy-based High Performance Computation of Boolean SNP-SNP Interactions Using GPUs. - Carlos Riveros; Manuel Ujaldon; Pablo Moscato (IWBBIO, 2014)

Toward energy efficiency in heterogeneous processors: findings on virtual screening methods. - Ginés D. Guerrero; Juan M. Cebrian; Horacio Emilio Pérez Sánchez; José M. García 001; Manuel Ujaldon; José M. Cecilia (Concurr. Comput. Pract. Exp., 2014)

Efficient data partitioning for the GPU computation of moment functions. - Manuel Jesús Martín-Requena; Pablo Moscato; Manuel Ujaldon (J. Parallel Distributed Comput., 2014)

Evaluating the SAT problem on P systems for different high-performance architectures. - José M. Cecilia; José M. García 001; Ginés D. Guerrero; Manuel Ujaldon (J. Supercomput., 2014)

Comparative evaluation of platforms for parallel Ant Colony Optimization. - Ginés D. Guerrero; José M. Cecilia; Antonio Llanes; José M. García 001; Martyn Amos; Manuel Ujaldon (J. Supercomput., 2014)

CUDA Achievements and GPU Challenges Ahead. - Manuel Ujaldon (AMDO, 2016)

Dense and Sparse Matrix-Vector Multiplication on Maxwell GPUs with PyCUDA. - Francisco Nurudín Álvarez; José Antonio Ortega-Toro; Manuel Ujaldón (CARLA, 2016)

HPC Accelerators with 3D Memory. - Manuel Ujaldon (CSE/EUC/DCABES, 2016)

Neuroimaging Registration on GPU: Energy-Aware Acceleration. - Francisco Nurudín Álvarez; José Antonio Cabrera; Juan Francisco Chico; Jesús Pérez; Manuel Ujaldon (IWBBIO, 2016)

Dynamic load balancing on heterogeneous clusters for parallel ant colony optimization. - Antonio Llanes; José M. Cecilia; Antonia M. Sánchez; José M. García 001; Martyn Amos; Manuel Ujaldon (Clust. Comput., 2016)

Legendre moments as high performance bone biomarkers: computational methods and GPU acceleration. - José A. Lachiondo; Manuel Ujaldon; Regina Berretta; Pablo Moscato (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2016)

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. - Jesús Pérez Serrano; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (IWBBIO (2), 2017)

DNA sequences alignment in multi-GPUs: acceleration and energy payoff. - Jesús Pérez Serrano; Edans F. de O. Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (BMC Bioinform., 2018)

Energy-based tuning of metaheuristics for molecular docking on multi-GPUs. - Jesús Pérez Serrano; Baldomero Imbernon; José M. Cecilia; Manuel Ujaldon (Concurr. Comput. Pract. Exp., 2018)

Energy-aware acceleration on GPUs: Findings on a bioinformatics benchmark. - Jesús Pérez; Andrés Rodríguez 001; Juan Francisco Chico; Domingo López-Rodríguez; Manuel Ujaldón (Sustain. Comput. Informatics Syst., 2018)

Energy-based tuning of convolutional neural networks on multi-GPUs. - Francisco M. Castro; Nicolás Guil; Manuel J. Marín-Jiménez; Jesús Pérez Serrano; Manuel Ujaldon (Concurr. Comput. Pract. Exp., 2019)