Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. - Nikolai Nøjgaard; Manuela Geiß; Daniel Merkle; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (WABI, 2017)

Reconstructing Gene Trees From Fitch's Xenology Relation. - Manuela Geiß; John Anders; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (CoRR, 2017)

A short note on undirected Fitch graphs. - Marc Hellmuth; Yangjing Long; Manuela Geiß; Peter F. Stadler (Art Discret. Appl. Math., 2018)

Time-consistent reconciliation maps and forbidden time travel. - Nikolai Nøjgaard; Manuela Geiß; Daniel Merkle; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (Algorithms Mol. Biol., 2018)

Best Match Graphs and Reconciliation of Gene Trees with Species Trees. - Manuela Geiß; Marcos González; Alitzel López Sánchez; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernández-Rosales; Peter F. Stadler (CoRR, 2019)

Hierarchical Colorings of Cographs. - Dulce I. Valdivia; Manuela Geiß; Marc Hellmuth; Maribel Hernández-Rosales; Peter F. Stadler (CoRR, 2019)

From Best Match Graphs to Gene Trees: A new perspective on graph-based orthology inference - Manuela Geiß (2019)

Explainability of AI-predictions based on psychological profiling. - Simon Neugebauer; Lukas Rippitsch; Florian Sobieczky; Manuela Geiß (ISM, 2020)

From pairs of most similar sequences to phylogenetic best matches. - Peter F. Stadler; Manuela Geiß; David Schaller 001; Alitzel López Sánchez; Marcos E. González Laffitte; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernandez-Rosales (Algorithms Mol. Biol., 2020)

Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs. - David Schaller 001; Manuela Geiß; Peter F. Stadler; Marc Hellmuth (CoRR, 2020)

Complexity of modification problems for reciprocal best match graphs. - Marc Hellmuth; Manuela Geiß; Peter F. Stadler (Theor. Comput. Sci., 2020)

Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs. - David Schaller 001; Manuela Geiß; Marc Hellmuth; Peter F. Stadler (Algorithms, 2021)

Heuristic algorithms for best match graph editing. - David Schaller 001; Manuela Geiß; Marc Hellmuth; Peter F. Stadler (Algorithms Mol. Biol., 2021)

Explainable AI by BAPC - Before and After correction Parameter Comparison. - Florian Sobieczky; Salma Mahmoud; Simon Neugebauer; Lukas Rippitsch; Manuela Geiß (CoRR, 2021)

Least resolved trees for two-colored best match graphs. - David Schaller 001; Manuela Geiß; Marc Hellmuth; Peter F. Stadler (J. Graph Algorithms Appl., 2021)

Fast and Automatic Object Registration for Human-Robot Collaboration in Industrial Manufacturing. - Manuela Geiß; Martin Baresch; Georgios C. Chasparis; Edwin Schweiger; Nico Teringl; Michael Zwick (DEXA Workshops, 2022)

IndustrialEdgeML - End-to-end edge-based computer vision systemfor Industry 5.0. - Raphael Wagner; Mario Matuschek; Philipp Knaack; Michael Zwick; Manuela Geiß (ISM, 2022)

Automatic Bounding Box Annotation with Small Training Data Sets for Industrial Manufacturing. - Manuela Geiß; Raphael Wagner; Martin Baresch; Josef Steiner; Michael Zwick (CoRR, 2022)

Hierarchical and modularly-minimal vertex colorings. - Dulce I. Valdivia; Maribel Hernández-Rosales; Manuela Geiß; Peter F. Stadler; Marc Hellmuth (Art Discret. Appl. Math., 2022)

Best Match Graphs With Binary Trees. - David Schaller 001; Manuela Geiß; Marc Hellmuth; Peter F. Stadler (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Personalized ML-Assisted Respiratory Muscle Training for Patients with Paraplegia. - Alfredo López; Clara Schachner; Shahzaib Khan; Tabarka Rajab; Manuela Geiß (EUROCAST (2), 2024)