Describing relevant indices from the resting state electrophysiological networks. - Jlenia Toppi; Manuela Petti; Fabrizio de Vico Fallani; Giovanni Vecchiato; Anton Giulio Maglione; Febo Cincotti; Serenella Salinari; Donatella Mattia; Fabio Babiloni; Laura Astolfi (EMBC, 2012)

Aged-related changes in brain activity classification with respect to age by means of graph indexes. - Manuela Petti; Jlenia Toppi; Floriana Pichiorri; Febo Cincotti; Serenella Salinari; Fabio Babiloni; Laura Astolfi; Donatella Mattia (EMBC, 2013)

A new statistical approach for the extraction of adjacency matrix from effective connectivity networks. - Jlenia Toppi; Fabrizio de Vico Fallani; Manuela Petti; Giovanni Vecchiato; Anton Giulio Maglione; Febo Cincotti; Serenella Salinari; Donatella Mattia; Fabio Babiloni; Laura Astolfi (EMBC, 2013)

The effect of normalization of Partial Directed Coherence on the statistical assessment of connectivity patterns: A simulation study. - Jlenia Toppi; Manuela Petti; Giovanni Vecchiato; Febo Cincotti; Serenella Salinari; Donatella Mattia; Francesca Babiloni; Laura Astolfi (EMBC, 2013)

A new descriptor of neuroelectrical activity during BCI-assisted motor imagery-based training in stroke patients. - Manuela Petti; Donatella Mattia; Floriana Pichiorri; Jlenia Toppi; Serenella Salinari; Francesca Babiloni; Laura Astolfi; Febo Cincotti (EMBC, 2014)

Individual cortical connectivity changes after stroke: A resampling approach to enable statistical assessment at single-subject level. - Manuela Petti; Floriana Pichiorri; Jlenia Toppi; Febo Cincotti; Serenella Salinari; Francesca Babiloni; Donatella Mattia; Laura Astolfi (EMBC, 2014)

Investigating statistical differences in connectivity patterns properties at single subject level: A new resampling approach. - Jlenia Toppi; Alessandra Anzolin; Manuela Petti; Febo Cincotti; Donatella Mattia; Serenella Salinari; Francesca Babiloni; Laura Astolfi (EMBC, 2014)

Time varying effective connectivity for describing brain network changes induced by a memory rehabilitation treatment. - Jlenia Toppi; Donatella Mattia; Alessandra Anzolin; Monica Risetti; Manuela Petti; Febo Cincotti; Fabio Babiloni; Laura Astolfi (EMBC, 2014)

Effect of inter-trials variability on the estimation of cortical connectivity by Partial Directed Coherence. - Manuela Petti; Stefano Caschera; Alessandra Anzolin; Jlenia Toppi; Floriana Pichiorri; Fabio Babiloni; Febo Cincotti; Donatella Mattia; Laura Astolfi (EMBC, 2015)

Interfacing brain and computer in neurorehabilitation. - Donatella Mattia; Laura Astolfi; Jlenia Toppi; Manuela Petti; Floriana Pichiorri; Febo Cincotti (BCI, 2016)

Measuring the agreement between brain connectivity networks. - Jlenia Toppi; Nicolina Sciaraffa; Yuri Antonacci; Alessandra Anzolin; Stefano Caschera; Manuela Petti; Donatella Mattia; Laura Astolfi (EMBC, 2016)

EEG Resting-State Brain Topological Reorganization as a Function of Age. - Manuela Petti; Jlenia Toppi; Fabio Babiloni; Febo Cincotti; Donatella Mattia; Laura Astolfi (Comput. Intell. Neurosci., 2016)

EEG source estimation accuracy in presence of simulated cortical lesions. - Stefano Caschera; Manuela Petti; Donatella Mattia; Laura Astolfi (EMBC, 2017)

Transcranial cerebellar direct current stimulation: Effects on brain resting state oscillatory and network activity. - Manuela Petti; Laura Astolfi; Marcella Masciullo; Silvia Clausi; Floriana Pichiorri; Febo Cincotti; Donatella Mattia; Marco Molinari (EMBC, 2017)

Community detection: Comparison among clustering algorithms and application to EEG-based brain networks. - Maria Grazia Puxeddu; Manuela Petti; Floriana Pichiorri; Febo Cincotti; Donatella Mattia; Laura Astolfi (EMBC, 2017)

Bci-Assisted Training for upper limb motor Rehabilitation: estimation of effects on Individual brain connectivity and motor Functions. - Manuela Petti; Floriana Pichiorri; Jlenia Toppi; Laura Astolfi; Febo Cincotti; Donatella Mattia (GBCIC, 2017)

Biological Random Walks: Integrating heterogeneous data in disease gene prioritization. - Michele Gentili; Leonardo Martini; Manuela Petti; Lorenzo Farina; Luca Becchetti (CIBCB, 2019)

The Optimal Setting for Multilayer Modularity Optimization in Multilayer Brain Networks. - Maria Grazia Puxeddu; Manuela Petti; Donatella Mattia; Laura Astolfi (EMBC, 2019)

Network Inference and Reconstruction in Bioinformatics. - Paolo Tieri; Lorenzo Farina; Manuela Petti; Laura Astolfi; Paola Paci; Filippo Castiglione (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

The modular organization of brain cortical connectivity across the human lifespan. - Maria Grazia Puxeddu; Joshua Faskowitz; Richard F. Betzel; Manuela Petti; Laura Astolfi; Olaf Sporns (NeuroImage, 2020)

Connectivity Significance for Disease Gene Prioritization in an Expanding Universe. - Manuela Petti; Daniele Bizzarri; Antonella Verrienti; Rosa Falcone; Lorenzo Farina (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Multi-layer analysis of multi-frequency brain networks as a new tool to study EEG topological organization. - Maria Grazia Puxeddu; Manuela Petti; Laura Astolfi (EMBC, 2021)

Protein-Protein Interaction Prediction via Graph Signal Processing. - Stefania Colonnese; Manuela Petti; Lorenzo Farina; Gaetano Scarano; Francesca Cuomo (IEEE Access, 2021)

SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups. - Manuela Petti; Antonella Verrienti; Paola Paci; Lorenzo Farina (Comput. Biol. Medicine, 2021)

SEED-G: Simulated EEG Data Generator for Testing Connectivity Algorithms. - Alessandra Anzolin; Jlenia Toppi; Manuela Petti; Febo Cincotti; Laura Astolfi (Sensors, 2021)

Differential Co-expression Network Analysis to Investigate Sexual Dimorphism in Colon Cancer. - Caterina Alfano; Lorenzo Farina; Manuela Petti (BIBM, 2022)

PROCONSUL: PRObabilistic exploration of CONnectivity Significance patterns for disease modULe discovery. - Riccardo De Luca; Marco Carfora; Gonzalo Blanco; Andrea Mastropietro; Manuela Petti; Paolo Tieri (BIBM, 2022)

Identification of Cancer Biomarkers for Multi-class Diagnostics through Network Analysis of RNAseq Data of Tumor-Educated Platelets. - Ali Toccacieli; Manuela Petti (BIBM, 2022)

Toward Disease Diagnosis Visual Support Bridging Classic and Precision Medicine. - Alessia Palleschi; Manuela Petti; Paolo Tieri; Marco Angelini (EuroVA@EuroVis, 2022)

Stratification of metastatic melanoma patients based on mutational signatures. - Caterina Alfano; Lorenzo Farina; Manuela Petti (BIBM, 2023)

Multi-layer network modelling of genomic and transcriptomic data to investigate the response to checkpoint inhibitors in NSCLC. - Davide Mascolo; Lorenzo Farina; Manuela Petti (BIBM, 2023)

Radiomics-based classification in imbalanced datasets: complexity or interpretability. - Simone Boesso; Lorenzo Farina; Manuela Petti (BIBM, 2024)

SHELLEY: Exploring Learning-Based Network Alignment on Biological Data. - Riccardo De Luca; Manuela Petti; Pietro H. Guzzi; Paolo Tieri (BIBM, 2024)

Exploring Drug Repurposing Success Stories Through a Network-based Approach: Insights from a Case Study. - Elisa Pierini; Ludovica Mazza; Manuela Petti; Paolo Tieri (BIBM, 2024)

MIRROR: miRNA regulation-level differential network to study sex and ethnic disparities in cancer. - Caterina Alfano; Marco Filetti; Lorenzo Farina; Manuela Petti (EMBC, 2024)

Differential Co-Expression Networks of Tumor Educated Platelets Transcriptome for Glioblastoma Multiforme Diagnosis. - Mattia Manna; Simone Boesso; Lorenzo Farina; Manuela Petti (CBMS, 2025)

Molecular mechanisms of sexual dimorphism in cancer through improved miRNA regulation-level network-based approach: MIRROR2. - Caterina Alfano; Marco Filetti; Lorenzo Farina; Manuela Petti (Comput. Biol. Medicine, 2025)