A correction method for systematic error in 1 H-NMR time-course data validated through stochastic cell culture simulation. - Stanislav Sokolenko; Marc Aucoin (BMC Syst. Biol., 2015)

Identifying model error in metabolic flux analysis - a generalized least squares approach. - Stanislav Sokolenko; Marco Quattrociocchi; Marc Aucoin (BMC Syst. Biol., 2016)

Calibrating spatiotemporal models of microbial communities to microscopy data: A review. - Aaron Yip; Julien Smith-Roberge; Sara Khorasani; Marc Aucoin; Brian P. Ingalls (PLoS Comput. Biol., 2022)

A coupled metabolic flux/compartmental hydrodynamic model for large-scale aerated bioreactors. - Ittisak Promma; Marc Aucoin; Nasser Mohieddin Abukhdeir; Hector M. Budman (Comput. Chem. Eng., 2024)

A flow alignment-informed method for compartmental modelling. - Alexandru Andrei Vasile; Marc Aucoin; Hector M. Budman; Nasser Mohieddin Abukhdeir (Comput. Chem. Eng., 2024)