Codon Usage Domains over Bacterial Chromosomes. - Marc Bailly-Bechet; Antoine Danchin; Mudassar Iqbal; Matteo Marsili; Massimo Vergassola (PLoS Comput. Biol., 2006)

A Prize-Collecting Steiner Tree Approach for Transduction Network Inference. - Marc Bailly-Bechet; Alfredo Braunstein; Riccardo Zecchina (CMSB, 2009)

Clustering with shallow trees - Marc Bailly-Bechet; S. Bradde; Alfredo Braunstein; Abraham D. Flaxman; L. Foini; Riccardo Zecchina (CoRR, 2009)

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. - Marc Bailly-Bechet; Alfredo Braunstein; Andrea Pagnani; Martin Weigt; Riccardo Zecchina (BMC Bioinform., 2010)

Finding undetected protein associations in cell signaling by belief propagation - Marc Bailly-Bechet; Christian Borgs; Alfredo Braunstein; Jennifer T. Chayes; A. Dagkessamanskaia; J.-M. François; Riccardo Zecchina (CoRR, 2011)

AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers. - Georgios D. Koutsovoulos; Solène Granjeon Noriot; Marc Bailly-Bechet; Etienne G. J. Danchin; Corinne Rancurel (PLoS Comput. Biol., 2022)