RNA-SeQC: RNA-seq metrics for quality control and process optimization. - David S. DeLuca; Joshua Z. Levin; Andrey Sivachenko; Tim Fennell; Marc-Danie Nazaire; Chris Williams; Michael Reich; Wendy Winckler; Gad Getz (Bioinform., 2012)

GenePattern Flow Cytometry Suite. - Josef Spidlen; Aaron Barsky; Karin Breuer; Peter Carr 004; Marc-Danie Nazaire; Barbara A. Hill; Yu Qian; Ted Liefeld; Michael Reich; Jill P. Mesirov; Peter Wilkinson; Richard H. Scheuermann; et al. (Source Code Biol. Medicine, 2013)

Towards cross-application model-agnostic federated cohort discovery. - Nicholas J. Dobbins; Michele Morris; Eugene Sadhu; Douglas MacFadden; Marc-Danie Nazaire; William Simons; Griffin M. Weber; Shawn N. Murphy; Shyam Visweswaran (J. Am. Medical Informatics Assoc., 2024)