Gene Name Extraction Using FlyBase Resources. - Alexander A. Morgan; Lynette Hirschman; Alexander S. Yeh; Marc E. Colosimo (BioNLP@ACL, 2003)

Gene name identification and normalization using a model organism database. - Alexander A. Morgan; Lynette Hirschman; Marc E. Colosimo; Alexander S. Yeh; Jeffrey B. Colombe (J. Biomed. Informatics, 2004)

Do you do text? - Christian Blaschke; Alexander S. Yeh; Evelyn Camon; Marc E. Colosimo; Rolf Apweiler; Lynette Hirschman; Alfonso Valencia (Bioinform., 2005)

Data preparation and interannotator agreement: BioCreAtIvE Task 1B. - Marc E. Colosimo; Alexander A. Morgan; Alexander S. Yeh; Jeffrey B. Colombe; Lynette Hirschman (BMC Bioinform., 2005)

Overview of BioCreAtIvE task 1B: normalized gene lists. - Lynette Hirschman; Marc E. Colosimo; Alexander A. Morgan; Alexander S. Yeh (BMC Bioinform., 2005)

BioCreAtIvE Task 1A: gene mention finding evaluation. - Alexander S. Yeh; Alexander A. Morgan; Marc E. Colosimo; Lynette Hirschman (BMC Bioinform., 2005)

Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique Identifiers. - Alexander A. Morgan; Benjamin Wellner; Jeffrey B. Colombe; Robert Arens; Marc E. Colosimo; Lynette Hirschman (Pacific Symposium on Biocomputing, 2007)

TreeViewJ: An application for viewing and analyzing phylogenetic trees. - Matthew W. Peterson; Marc E. Colosimo (Source Code Biol. Medicine, 2007)

Nephele: genotyping via complete composition vectors and MapReduce. - Marc E. Colosimo; Matthew W. Peterson; Scott A. Mardis; Lynette Hirschman (Source Code Biol. Medicine, 2011)