A systematic benchmark of machine learning methods for protein-RNA interaction prediction. - Marc Horlacher; Giulia Cantini; Julian Hesse; Patrick Schinke; Nicolas Goedert; Shubhankar Londhe; Lambert Moyon; Annalisa Marsico (Briefings Bioinform., 2023)

RNA trafficking and subcellular localization - a review of mechanisms, experimental and predictive methodologies. - Jun Wang 161; Marc Horlacher; Lixin Cheng; Ole Winther (Briefings Bioinform., 2023)

BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks. - Frederikke Isa Marin; Felix Teufel; Marc Horlacher; Dennis Madsen; Dennis Pultz; Ole Winther; Wouter Boomsma (ICLR, 2024)

DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning. - Jun Wang 161; Marc Horlacher; Lixin Cheng; Ole Winther (Bioinform., 2024)