Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction. - Marc Hulsman; Marcel J. T. Reinders; Dick de Ridder (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization. - Marc Hulsman; Anouk Mentink; Eugene P. van Someren; Koen J. Dechering; Jan de Boer; Marcel J. T. Reinders (BMC Bioinform., 2010)

Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data. - Marc Hulsman; Jan Bot; Arjen P. de Vries; Marcel J. T. Reinders (DILS, 2013)

Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. - Sepideh Babaei; Marc Hulsman; Marcel J. T. Reinders; Jeroen de Ridder (BMC Bioinform., 2013)

Scale-space measures for graph topology link protein network architecture to function. - Marc Hulsman; Christos Dimitrakopoulos; Jeroen de Ridder (Bioinform., 2014)

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. - Sepideh Babaei; Ahmed Mahfouz; Marc Hulsman; Boudewijn P. F. Lelieveldt; Jeroen de Ridder; Marcel J. T. Reinders (PLoS Comput. Biol., 2015)

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data. - Alexey A. Gritsenko; Marc Hulsman; Marcel J. T. Reinders; Dick de Ridder (PLoS Comput. Biol., 2015)

snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets. - Niccolo Tesi; Sven van der Lee; Marc Hulsman; Henne Holstege; Marcel J. T. Reinders (Nucleic Acids Res., 2021)