A benchmark for microRNA quantification algorithms using the OpenArray platform. - Matthew N. McCall; Alexander S. Baras; Alexander Crits-Christoph; Roxann Ingersoll; Melissa A. McAlexander; Kenneth W. Witwer; Marc K. Halushka (BMC Bioinform., 2016)

miRge 2.0 for comprehensive analysis of microRNA sequencing data. - Yin Lu; Alexander S. Baras; Marc K. Halushka (BMC Bioinform., 2018)

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. - Thomas Desvignes; Phillipe Loher; Karen Eilbeck; Jeffery Ma; Gianvito Urgese; Bastian Fromm; Jason Sydes; Ernesto Aparicio-Puerta; Víctor Barrera; Roderic Espín; Florian Thibord; Xavier Bofill-De Ros; et al. (Bioinform., 2020)

The effect of tissue composition on gene co-expression. - Yun Zhang 021; Jonavelle Cuerdo; Marc K. Halushka; Matthew N. McCall (Briefings Bioinform., 2021)