Adaptation on Rugged Landscapes Generated by Iterated Local Interactions of Neighboring Genes. - Marc Lipsitch (ICGA, 1991)

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data. - Colin J. Worby; Marc Lipsitch; William P. Hanage (PLoS Comput. Biol., 2014)

Enhancing disease surveillance with novel data streams: challenges and opportunities. - Benjamin M. Althouse; Samuel V. Scarpino; Lauren Ancel Meyers; John W. Ayers; Marisa Bargsten; Joan Baumbach; John S. Brownstein; Lauren Castro; Hannah E. Clapham; Derek A. T. Cummings; Sara Y. Del Valle; Stephen G. Eubank; et al. (EPJ Data Sci., 2015)

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine. - Francisco Y. Cai; Thomas Fussell; Sarah Cobey; Marc Lipsitch (PLoS Comput. Biol., 2018)

Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2020)

Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking. - Sarah F. McGough; Michael A. Johansson; Marc Lipsitch; Nicolas A. Menzies (PLoS Comput. Biol., 2020)

Correction: Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2021)

Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches. - Fred S. Lu; André T. Nguyen; Nicholas B. Link; Mathieu Molina; Jessica T. Davis; Matteo Chinazzi; Xinyue Xiong; Alessandro Vespignani; Marc Lipsitch; Mauricio Santillana (PLoS Comput. Biol., 2021)

Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data. - Pablo M. De Salazar; Fred Lu; James A. Hay; Diana Gomez-Barroso; Pablo Fernández-Navarro; Elena V. Martínez; Jenaro Astray-Mochales; Rocío Amillategui; Ana García-Fulgueiras; Maria D. Chirlaque; Alonso Sánchez-Migallón; Amparo Larrauri; et al. (PLoS Comput. Biol., 2022)

Infectious disease surveillance needs for the United States: lessons from COVID-19. - Marc Lipsitch; Mary T. Bassett; John S. Brownstein; Paul Elliott; David Eyre; M. Kate Grabowski; James A. Hay; Michael A. Johansson; Stephen M. Kissler; Daniel B. Larremore; Jennifer Layden; Justin Lessler; et al. (CoRR, 2023)