Algorithm-driven Artifacts in median polish summarization of Microarray data. - Federico M. Giorgi; Anthony M. Bolger; Marc Lohse; Björn Usadel (BMC Bioinform., 2010)

Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. - Axel Nagel; Marc Lohse; Anthony M. Bolger; Mark Stitt; Björn Usadel (Human Vision and Electronic Imaging, 2011)

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. - Marc Lohse; Anthony M. Bolger; Axel Nagel; Alisdair R. Fernie; John E. Lunn; Mark Stitt; Björn Usadel (Nucleic Acids Res., 2012)

OrganellarGenomeDRAW - a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. - Marc Lohse; Oliver Drechsel; Sabine Kahlau; Ralph Bock (Nucleic Acids Res., 2013)

Trimmomatic: a flexible trimmer for Illumina sequence data. - Anthony M. Bolger; Marc Lohse; Björn Usadel (Bioinform., 2014)