Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise. - Marc R. Birtwistle; Jens Rauch; Anatoly Kiyatkin; Edita Aksamitiene; Maciej Dobrzynski; Jan B. Hoek; Walter Kolch; Babatunde A. Ogunnaike; Boris N. Kholodenko (BMC Syst. Biol., 2012)

A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens. - Mehdi Bouhaddou; Anne Marie Barrette; Alan D. Stern; Rick J. Koch; Matthew S. DiStefano; Eric A. Riesel; Luis C. Santos; Annie L. Tan; Alex E. Mertz; Marc R. Birtwistle (PLoS Comput. Biol., 2018)

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems. - Andreas Dräger; Tomás Helikar; Matteo Barberis; Marc R. Birtwistle; Laurence Calzone; Claudine Chaouiya; Jan Hasenauer; Jonathan R. Karr; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar (Bioinform., 2021)

CellTrackVis: Analyzing the Performance of Cell Tracking Algorithms. - Weimin Li; Xiang Zhang; Alan D. Stern; Marc R. Birtwistle; Federico Iuricich (EuroVis (Short Papers), 2022)

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting. - Anna Niarakis; Juilee Thakar; Matteo Barberis; María Rodríguez Martínez; Tomás Helikar; Marc R. Birtwistle; Claudine Chaouiya; Laurence Calzone; Andreas Dräger (Bioinform., 2022)

Predicting anti-cancer drug combination responses with a temporal cell state network model. - Deepraj Sarmah; Wesley O. Meredith; Ian K. Weber; Madison R. Price; Marc R. Birtwistle (PLoS Comput. Biol., 2023)

Low-Frame-Rate Cell Tracking: Unmet Needs and Future Directions. - Mina Gachloo; Akhila Nangineedi; Mahsa Partovi; Fardifa Fathmiul Alam; Tzu-Yu Chu; James Schvaneveldt; Xiaoming Lu; Tirthankar Biswas; Marc R. Birtwistle; Federico Iuricich (CVPR Workshops, 2025)