Automatic clustering of large sequence databases. - Antje Krause; Pierre Nicodème; Marc Rehmsmeier; Martin Vingron (German Conference on Bioinformatics, 1998)

Phylogeny meets sequence search. - Marc Rehmsmeier; Martin Vingron (German Conference on Bioinformatics, 1999)

Prediction and Visualization of Structural Switches in RNA. - Robert Giegerich; Dirk Haase; Marc Rehmsmeier (Pacific Symposium on Biocomputing, 1999)

WWW access to the SYSTERS protein sequence cluster set. - Antje Krause; Pierre Nicodème; Erich Bornberg-Bauer; Marc Rehmsmeier; Martin Vingron (Bioinform., 1999)

Sequence Database Search Using Jumping Alignments. - Rainer Spang; Marc Rehmsmeier; Jens Stoye (ISMB, 2000)

Sequence Database Search Using Jumping Alignments. - Constantin Bannert; Marc Rehmsmeier; Rainer Spang; Jens Stoye (German Conference on Bioinformatics, 2001)

Non-symmetric score matrices and the detection of homologous transmembrane proteins. - Tobias Müller 001; Sven Rahmann; Marc Rehmsmeier (ISMB (Supplement of Bioinformatics), 2001)

Database searching with phylogenetic trees. - Marc Rehmsmeier (2001)

Phase4: Automatic Evaluation of Database Search Methods. - Marc Rehmsmeier (Briefings Bioinform., 2002)

A Novel Approach to Remote Homology Detection: Jumping Alignments. - Rainer Spang; Marc Rehmsmeier; Jens Stoye (J. Comput. Biol., 2002)

RNAshapes: an integrated RNA analysis package based on abstract shapes. - Peter Steffen; Björn Voß; Marc Rehmsmeier; Jens Reeder; Robert Giegerich (Bioinform., 2006)

jPREdictor: a versatile tool for the prediction of cis-regulatory elements. - Thomas Fiedler; Marc Rehmsmeier (Nucleic Acids Res., 2006)

RNAhybrid: microRNA target prediction easy, fast and flexible. - Jan Krüger; Marc Rehmsmeier (Nucleic Acids Res., 2006)

mkESA: enhanced suffix array construction tool. - Robert Homann; David Fleer; Robert Giegerich; Marc Rehmsmeier (Bioinform., 2009)

Robust de novo pathway enrichment with KeyPathwayMiner 5. - Nicolas Alcaraz; Markus List; Martin Dissing-Hansen; Marc Rehmsmeier; Qihua Tan; Jan Mollenhauer; Henrik J. Ditzel; Jan Baumbach (F1000Research, 2016)

Precrec: fast and accurate precision-recall and ROC curve calculations in R. - Takaya Saito; Marc Rehmsmeier (Bioinform., 2017)

MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics. - Bjørn André Bredesen; Marc Rehmsmeier (BMC Bioinform., 2021)

MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts. - Andrea Hita; Gilles Brocart; Ana Fernandez; Marc Rehmsmeier; Anna Alemany; Sol Schvartzman (BMC Bioinform., 2022)

Correction: MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts. - Andrea Hita; Gilles Brocart; Ana Fernandez; Marc Rehmsmeier; Anna Alemany; Sol Schvartzman (BMC Bioinform., 2022)