Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. - Clemens Gröpl; Eva Lange; Knut Reinert; Oliver Kohlbacher; Marc Sturm; Christian G. Huber; Bettina M. Mayr; Christoph L. Klein (CompLife, 2005)

A machine learning approach for prediction of DNA and peptide retention times. - Marc Sturm; Sascha Quinten; Christian G. Huber; Oliver Kohlbacher (Computational Proteomics, 2005)

TOPP - the OpenMS proteomics pipeline. - Oliver Kohlbacher; Knut Reinert; Clemens Gröpl; Eva Lange; Nico Pfeifer; Ole Schulz-Trieglaff; Marc Sturm (Bioinform., 2007)

OpenMS - An open-source software framework for mass spectrometry. - Marc Sturm; Andreas Bertsch; Clemens Gröpl; Andreas Hildebrandt 001; Rene Hussong; Eva Lange; Nico Pfeifer; Ole Schulz-Trieglaff; Alexandra Zerck; Knut Reinert; Oliver Kohlbacher (BMC Bioinform., 2008)

SILACAnalyzer - A Tool for Differential Quantitation of Stable Isotope Derived Data. - Lars Nilse; Marc Sturm; David C. Trudgian; Mogjiborahman Salek; Paul F. G. Sims; Kathleen M. Carroll; Simon J. Hubbard (CIBB, 2009)

OpenMS - a framework for computational mass spectrometry. - Marc Sturm (2010)

Physician Know Thyself: EHRs and the Quantified Clinician. - Daniel M. Stein; Eugenia Siegler; David K. Vawdrey; Marc Sturm; Niloo Sobhani; Soumitra Sengupta; Colin G. Walsh; Gilad J. Kuperman (AMIA, 2013)

UPDtool: a tool for detection of iso- and heterodisomy in parent-child trios using SNP microarrays. - Christopher M. Schroeder; Marc Sturm; Andreas Dufke; Ulrike Mau-Holzmann; Thomas Eggermann; Sven Poths; Olaf Riess; Michael Bonin (Bioinform., 2013)

HARVEST, a Holistic Patient Record Summarizer at the Point of Care. - Noémie Elhadad; Sharon Lipsky Gorman; Jamie S. Hirsch; Connie Liu; David K. Vawdrey; Marc Sturm (AMIA, 2014)

OptiType: precision HLA typing from next-generation sequencing data. - András Szolek; Benjamin Schubert; Christopher Mohr; Marc Sturm; Magdalena Feldhahn; Oliver Kohlbacher (Bioinform., 2014)

Intelligible Models for HealthCare: Predicting Pneumonia Risk and Hospital 30-day Readmission. - Rich Caruana; Yin Lou; Johannes Gehrke; Paul Koch; Marc Sturm; Noemie Elhadad (KDD, 2015)

HARVEST, a longitudinal patient record summarizer. - Jamie S. Hirsch; Jessica S. Tanenbaum; Sharon Lipsky Gorman; Connie Liu; Eric Schmitz; Dritan Hashorva; Artem Ervits; David K. Vawdrey; Marc Sturm; Noémie Elhadad (J. Am. Medical Informatics Assoc., 2015)

SeqPurge: highly-sensitive adapter trimming for paired-end NGS data. - Marc Sturm; Christopher M. Schroeder; Peter Bauer (BMC Bioinform., 2016)

A comprehensive quality control workflow for paired tumor-normal NGS experiments. - Christopher M. Schroeder; Franz J. Hilke; Markus W. Löffler; Michael Bitzer; Florian Lenz; Marc Sturm (Bioinform., 2017)