Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. - Gunnar Schramm; Marcus Oswald; Hanna Seitz; Sebastian Sager; Marc Zapatka; Gerhard Reinelt; Roland Eils; Rainer König (LWA, 2006)

Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. - Rainer König; Gunnar Schramm; Marcus Oswald; Hanna Seitz; Sebastian Sager; Marc Zapatka; Gerhard Reinelt; Roland Eils (BMC Bioinform., 2006)

Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli. - Gunnar Schramm; Marc Zapatka; Roland Eils; Rainer König (BMC Bioinform., 2007)

Active medulloblastoma enhancers reveal subgroup-specific cellular origins. - Charles Y. Lin; Serap Erkek; Yiai Tong; Linlin Yin; Alexander J. Federation; Marc Zapatka; Parthiv Haldipur; Daisuke Kawauchi; Thomas Risch; Hans-Jörg Warnatz; Barbara C. Worst; Bensheng Ju; et al. (Nat., 2016)

DNA methylation-based classification of central nervous system tumours. - David Capper; David T. W. Jones; Martin Sill; Volker Hovestadt; Daniel Schrimpf; Dominik Sturm; Christian Koelsche; Felix Sahm; Lukas Chavez; David E. Reuss; Annekathrin Kratz; Annika K. Wefers; et al. (Nat., 2018)

scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis. - John K. L. Wong; Lena Jassowicz; Christel Herold-Mende; Martina Seiffert; Jan-Phillip Mallm; Peter Lichter; Marc Zapatka (BMC Bioinform., 2023)

Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice. - Bjarne Daenekas; Eilís Pérez; Fabio Boniolo; Sabina Stefan; Salvatore Benfatto; Martin Sill; Dominik Sturm; David T. W. Jones; David Capper; Marc Zapatka; Volker Hovestadt (Bioinform., 2024)