RNAdb 2.0 - an expanded database of mammalian non-coding RNAs. - Ken C. Pang; Stuart Stephen; Marcel E. Dinger; Pär G. Engström; Boris Lenhard; John S. Mattick (Nucleic Acids Res., 2007)

Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities. - Marcel E. Dinger; Ken C. Pang; Tim R. Mercer; John S. Mattick (PLoS Comput. Biol., 2008)

NRED: a database of long noncoding RNA expression. - Marcel E. Dinger; Ken C. Pang; Tim R. Mercer; Mark L. Crowe; Sean M. Grimmond; John S. Mattick (Nucleic Acids Res., 2009)

GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs. - Alberto Risueño; Celia Fontanillo; Marcel E. Dinger; Javier De Las Rivas (BMC Bioinform., 2010)

lncRNAdb: a reference database for long noncoding RNAs. - Paulo P. Amaral; Michael B. Clark; Dennis K. Gascoigne; Marcel E. Dinger; John S. Mattick (Nucleic Acids Res., 2011)

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. - Dennis K. Gascoigne; Seth W. Cheetham; Pierre B. Cattenoz; Michael B. Clark; Paulo P. Amaral; Ryan J. Taft; Dagmar Wilhelm; Marcel E. Dinger; John S. Mattick (Bioinform., 2012)

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. - Xiu Cheng Quek; Daniel W. Thomson; Jesper L. V. Maag; Nenad Bartonicek; Bethany Signal; Michael B. Clark; Brian S. Gloss; Marcel E. Dinger (Nucleic Acids Res., 2015)

Machine learning annotation of human branchpoints. - Bethany Signal; Brian S. Gloss; Marcel E. Dinger; Tim R. Mercer (Bioinform., 2018)

Seave: a comprehensive web platform for storing and interrogating human genomic variation. - Velimir Gayevskiy; Tony Roscioli; Marcel E. Dinger; Mark J. Cowley (Bioinform., 2019)

Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. - Yuansheng Liu; Zu-Guo Yu; Marcel E. Dinger; Jinyan Li 001 (Bioinform., 2019)

Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. - Tudor Groza; Honghan Wu; Marcel E. Dinger; Daniel Danis; Coleman Hilton; Anita Bagley; Jon R. Davids; Ling Luo 001; Zhiyong Lu; Peter N. Robinson (Bioinform., 2023)

Post-transcriptional regulation supports the homeostatic expression of mature RNA. - Zheng Su; Mingyan Fang; Andrei Smolnikov; Fatemeh Vafaee; Marcel E. Dinger; Emily C. Oates (Briefings Bioinform., 2024)