OSPREY 3.0: Open-source protein redesign for you, with powerful new features. - Mark A. Hallen; Jeffrey W. Martin; Adegoke A. Ojewole; Jonathan D. Jou; Anna U. Lowegard; Marcel S. Frenkel; Pablo Gainza; Hunter M. Nisonoff; Aditya Mukund; Siyu Wang; Graham T. Holt; David Zhou; et al. (J. Comput. Chem., 2018)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface. - Anna U. Lowegard; Marcel S. Frenkel; Graham T. Holt; Jonathan D. Jou; Adegoke A. Ojewole; Bruce Randall Donald (PLoS Comput. Biol., 2020)

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus. - Siyu Wang; Stephanie M. Reeve; Graham T. Holt; Adegoke A. Ojewole; Marcel S. Frenkel; Pablo Gainza; Santosh Keshipeddy; Vance G. Fowler; Dennis L. Wright; Bruce Randall Donald (PLoS Comput. Biol., 2022)