Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design. - Marcel Schmidt am Busch; Anne Lopes; Najette Amara; Christine Bathelt; Thomas Simonson (BMC Bioinform., 2008)

Computational protein design: Software implementation, parameter optimization, and performance of a simple model. - Marcel Schmidt am Busch; Anne Lopes; David Mignon; Thomas Simonson (J. Comput. Chem., 2008)

Computational design of protein-ligand binding: Modifying the specificity of asparaginyl-tRNA synthetase. - Anne Lopes; Marcel Schmidt am Busch; Thomas Simonson (J. Comput. Chem., 2010)

Computational protein design: The proteus software and selected applications. - Thomas Simonson; Thomas Gaillard; David Mignon; Marcel Schmidt am Busch; Anne Lopes; Najette Amara; Savvas Polydorides; Audrey Sedano; Karen Druart; Georgios Archontis (J. Comput. Chem., 2013)