Hidden Markov Models in Molecular Biology: New Algorithms and Applications. - Pierre Baldi; Yves Chauvin; Tim Hunkapiller; Marcella A. McClure (NIPS, 1992)

Parameterization studies of hidden Markov models representing highly divergent protein sequences. - Marcella A. McClure; Rajasekhar Raman (HICSS (5), 1995)

Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation. - Marcella A. McClure; Chris Smith; Pete Elton (ISMB, 1996)

The complexities of genome analysis, the Retroid agent perspective. - Marcella A. McClure (Bioinform., 2000)