ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. - Manolo Gouy; Christian Gautier; Marcella Attimonelli; Cecilia Lanave; G. di Paola (Comput. Appl. Biosci., 1985)

A simple method for global sequence comparison. - Elisabetta Pizzi; Marcella Attimonelli; Sabino Liuni; Clara Frontali; Cecilia Saccone (Nucleic Acids Res., 1992)

FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. - N. Prunella; Sabino Liuni; Marcella Attimonelli; Graziano Pesole (Comput. Appl. Biosci., 1993)

MmtDB: The Metazoa Mitochonrial DNA Variants Specialized Database. - Marcella Attimonelli; D. Calo; A. Depascali; M. Porzio; F. Tanzariello; M. Vitale; Cecilia Saccone (CODATA, 1994)

CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. - Giorgio Grillo; Marcella Attimonelli; Sabino Liuni; Graziano Pesole (Comput. Appl. Biosci., 1996)

MmtDB: a Metazoa mitochondrial DNA variants database. - D. Calo; A. Depascali; D. Sasanelli; F. Tanzariello; Mila Tommaseo Ponzetta; Cecilia Saccone; Marcella Attimonelli (Nucleic Acids Res., 1997)

The mitBASE human dataset structure. - Marcella Attimonelli; D. Calo; J. M. Cooper; A. de Montalvo; Flavio Licciulli; D. Sasanelli; K. Stevens; B. S. Malladi; Cecilia Saccone; Anthony H. V. Shapira (Nucleic Acids Res., 1998)

Update of MmtDB: a Metazoa mitochondrial DNA variants database. - Marcella Attimonelli; D. Calo; A. de Montalvo; Cecilia Lanave; D. Sasanelli; Mila Tommaseo Ponzetta; Cecilia Saccone (Nucleic Acids Res., 1998)

MitBASE: a comprehensive and integrated mitochondrial DNA database. - Marcella Attimonelli; N. Altamura; R. Benne; C. Boyen; A. Brennicke; A. Carone; J. M. Cooper; Domenica D'Elia; A. de Montalvo; B. de Pinto; Mariateresa De Robertis; Pawel Golik; et al. (Nucleic Acids Res., 1999)

Update of the Human MitBASE database. - Marcella Attimonelli; J. M. Cooper; Domenica D'Elia; A. de Montalvo; Mariateresa De Robertis; Heikki Lehväslaiho; S. B. Malladi; F. Memeo; K. Stevens; A. H. V. Schapira; Cecilia Saccone (Nucleic Acids Res., 1999)

Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences. - A. Carone; S. B. Malladi; Marcella Attimonelli; Cecilia Saccone (Nucleic Acids Res., 1999)

Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences. - Cecilia Lanave; Marcella Attimonelli; Mariateresa De Robertis; Flavio Licciulli; Sabino Liuni; Elisabetta Sbisà; Cecilia Saccone (Nucleic Acids Res., 1999)

KEYnet: a keywords database for biosequences functional organization. - Flavio Licciulli; Domenico Catalano; Domenica D'Elia; V. Lorusso; Marcella Attimonelli (Nucleic Acids Res., 1999)

MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status. - Marcella Attimonelli; N. Altamura; R. Benne; A. Brennicke; J. M. Cooper; Domenica D'Elia; A. de Montalvo; B. de Pinto; Mariateresa De Robertis; Pawel Golik; Volker Knoop; Cecilia Lanave; et al. (Nucleic Acids Res., 2000)

Update of KEYnet: a gene and protein names database for biosequences functional organisation. - Domenico Catalano; Flavio Licciulli; Domenica D'Elia; Marcella Attimonelli (Nucleic Acids Res., 2000)

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences. - Cecilia Lanave; Sabino Liuni; Flavio Licciulli; Marcella Attimonelli (Nucleic Acids Res., 2000)

MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. - Graziano Pesole; Carmela Gissi; Domenico Catalano; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marcella Attimonelli; Cecilia Saccone (Nucleic Acids Res., 2000)

MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. - Marcella Attimonelli; Domenico Catalano; Carmela Gissi; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Monica Santamaria; Graziano Pesole; Cecilia Saccone (Nucleic Acids Res., 2002)

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences. - Cecilia Lanave; Flavio Licciulli; Mariateresa De Robertis; Alessandra Marolla; Marcella Attimonelli (Nucleic Acids Res., 2002)

MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. - Marco Sardiello; Flavio Licciulli; Domenico Catalano; Marcella Attimonelli; Corrado Caggese (Nucleic Acids Res., 2003)

HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research. - Marcella Attimonelli; Matteo Accetturo; Monica Santamaria; Daniela Lascaro; Gaetano Scioscia; Graziano Pappadà; Luigi Russo 004; Luigi Zanchetta; Mila Tommaseo Ponzetta (BMC Bioinform., 2005)

Mining Information Extraction Models for HmtDB annotation. - Margherita Berardi; Donato Malerba; Marcella Attimonelli (ICDM Workshops, 2006)

RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences. - Francesco Rubino; Marcella Attimonelli (BMC Bioinform., 2009)

Primates and mouse NumtS in the UCSC Genome Browser. - Francesco Maria Calabrese; Domenico Simone; Marcella Attimonelli (BMC Bioinform., 2012)

HmtDB, a genomic resource for mitochondrion-based human variability studies. - Francesco Rubino; Roberta Piredda; Francesco Maria Calabrese; Domenico Simone; Martin Lang 002; Claudia Calabrese; Vittoria Petruzzella; Mila Tommaseo Ponzetta; Giuseppe Gasparre; Marcella Attimonelli (Nucleic Acids Res., 2012)

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. - Claudia Calabrese; Domenico Simone; Maria Angela Diroma; Mariangela Santorsola; Cristiano Guttà; Giuseppe Gasparre; Ernesto Picardi; Graziano Pesole; Marcella Attimonelli (Bioinform., 2014)

A comprehensive collection of annotations to interpret sequence variation in human mitochondrial transfer RNAs. - Maria Angela Diroma; Paolo Lubisco; Marcella Attimonelli (BMC Bioinform., 2016)

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor. - Rosanna Clima; Roberto Preste; Claudia Calabrese; Maria Angela Diroma; Mariangela Santorsola; Gaetano Scioscia; Domenico Simone; Lishuang Shen; Giuseppe Gasparre; Marcella Attimonelli (Nucleic Acids Res., 2017)

HmtVar: a new resource for human mitochondrial variations and pathogenicity data. - Roberto Preste; Ornella Vitale; Rosanna Clima; Giuseppe Gasparre; Marcella Attimonelli (Nucleic Acids Res., 2019)

Annotation and curation of human genomic variations: an ELIXIR Implementation Study. - Alessia David; Valérie Barbié; Marcella Attimonelli; Roberto Preste; Enni Makkonen; Heidi Marjonen; Mats R. K. Lindstedt; Kati Kristiansson; Sarah E. Hunt; Fiona Cunningham; Ilkka Lappalainen; Michael J. E. Sternberg (F1000Research, 2020)